Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-12265

ABSTRACT: Transcription profiling by array of human osteogenic cells at different stages of the differentiation process

OTHER RELATED OMICS DATASETS IN: PRJNA113847PRJNA113849PRJNA113845PRJNA113649

PROVIDER: E-GEOD-12265 | ExpressionAtlas | 2015-08-28

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-12265-analysis-methods.tsv	Tabular
	E-GEOD-12265-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-12265-configuration.xml	Xml
	E-GEOD-12265-percentile-ranks.tsv	Tabular
	E-GEOD-12265.condensed-sdrf.tsv	Tabular

Items per page:

1 - 5 of 95

Similar Datasets

Mus musculus

Project description:[E-MTAB-368] Transcription profiling by array of mouse embryos at 8 different stages

| PRJNA143267 | ENA

Gallus gallus

Project description:[E-MTAB-366] Transcription profiling by array of chicken embryos at 15 different stages

| PRJNA143263 | ENA

TAF10 interacts with GATA1 transcription factor and controls mouse erythropoiesis

Project description:The stoichiometries of TFIID and SAGA (TAF10-containing complexes) have been quantified in mouse and human erythroid cells. TAF10 immunoprecipitations (IPs) have been carried out in erythroid cells at different stages of differentiation and development followed by quantitative mass spectrometry (MS). Interactions of TFIID and SAGA with several transcription factors and specifically with GATA-1 have been identified. GATA-1 immunoprecipitation (IP) in MEL cells also identified the reverse interactions with subunits of the TFIID and SAGA after MS analysis.

2015-04-21 | PXD000729 | Pride

Xenopus laevis

Project description:[E-MTAB-369] Transcription profiling by array of Xenopus laevis embryos at 15 different stages

| PRJNA143269 | ENA

Chromatin regulatory dynamics of early development and regional specification in a directed differentiation model of the human small intestine

Project description:Assessment of genomewide nascent transcription activity and transcriptomic profiles across different stages of directed differentiation from human pluripotent stem cells (hPSC) into small intesitnal organaoids

2021-01-27 | GSE142316 | GEO

Affymetrix Cotton Genome array expression data of cotton fiber at different developmental stages from different varieties of Gossypium hirsutum

Project description:Cotton fiber were used for the expression analysis at different developmental stages Affymetrix Cotton Genome array were used for the global profiling of gene expression of cotton fiber at different developmental stages

2012-03-20 | GSE36228 | GEO

miRNA profiling of normal mature B cells

Project description:miRNA profiling has been performed on normal mature B cells at different stages of differentiation (naive, germinal center and memory). The main goal is to identify miRNA signatures associated with differentiation stages of normal B cells. Keywords: miRNA, normal mature B cells

2009-06-26 | GSE15144 | GEO

Epigenetic profiling of human CD4+ memory T cells reveals their proliferative history and argues in favor of a progressive differentiation model driven by epigenetically controlled master regulators.

Project description:A key element of adaptive immunity is the development of long-lived memory cells, which protect against recurring infection by providing a highly enriched pool of antigen-specific cells ready to react to the pathogen. Different classes of memory T cells occur upon primary activation of naive T cells, however, their detailed differentiation pathway is not entirely clear. As part of the IHEC consortium, we generated genome-wide epigenetic maps of a number of CD4+ T cell memory (Tmem) stages including rare subsets such as terminally differentiated (TEMRA) and bone marrow-resident Tmem. We found that CD4+ T cells show progressive global DNA demethylation with differentiation into memory stages, which reflects their proliferative history and likely indicates their decline in differentiation and proliferation potential. Furthermore, transcriptomic profiling combined with co-regulation network analyses arranged different Tmem subsets into a successive differentiation pathway. In addition, we identified a number of epigenetically controlled candidate master regulators for Tmem formation, of which we functionally validated a new methylation-sensitive promoter for the known 'naive-keeper' transcription factor Foxp1. Our study highlights the power of epigenomic datasets in the elucidation of the cellular history but also of the functional potential of T cell populations including the identification of epigenetically controlled master regulators.

| EGAS00001001624 | EGA

Understanding human fetal pancreas development using subpopulation sorting and RNA sequencing

Project description:To decipher the populations of cells present in the human fetal pancreas and their lineage relationships, we developed strategies to isolate pancreatic progenitors, endocrine progenitors and endocrine cells. Transcriptome analysis of the individual populationsrevealed a large degree of conservation among vertebrates in the drivers of gene expression changes occurring at different steps of differentiation, althoughnotably, sometimes, different members of the same gene family are expressed. The transcriptome analysis establishes a resource to identify novel genes and pathways involved in human pancreas development. Single cell profiling further captured intermediate stages ofdifferentiation and enabled us to decipher the sequence of transcriptional events occurring during human endocrine differentiation. Furthermore, we evaluate how well individual pancreatic cells derived in vitro from human pluripotent stem cells mirror the natural processoccurring in human fetuses. This comparison uncovers a few differences at the progenitor steps, a convergence at the steps of endocrine induction and the current inability to fully resolve endocrine cell subtypes in vitro.

| EGAS00001003127 | EGA

Gene expression from induced CB-derived neurons at different time of differentiation

Project description:Gene expression from cord blood stem cells and respective derived neuronal cells at different times point of differentiation:CD133+ cells; Keywords: Expression Profiling by array

2012-06-05 | GSE38431 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data