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E-GEOD-15105

ABSTRACT: Transcription profiling by array of Arabidopsis mutant for bodyguard (bdg), lacerata (lcr) and fiddlehead (fdh) against wild-type controls

OTHER RELATED OMICS DATASETS IN: PRJNA114857

PROVIDER: E-GEOD-15105 | ExpressionAtlas | 2014-09-09

REPOSITORIES: ExpressionAtlas

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			Action	DRS
	E-GEOD-15105-analysis-methods.tsv	Tabular
	E-GEOD-15105-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-15105-configuration.xml	Xml
	E-GEOD-15105-percentile-ranks.tsv	Tabular
	E-GEOD-15105.condensed-sdrf.tsv	Tabular

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Transcription profiluing of Arabidopsis - probing gene misregulation in bodyguard, lacerata and fiddlehead mutants

Project description:Although bodyguard (bdg), lacerata (lcr) and fiddlehead (fdh) mutations affect three unrelated genes, they trigger similar effects, i.e. ectopic organ fusion, increase of cuticle permeability. After performing cutin and wax analyses on these Arabidopsis thaliana mutants, which did not coincide with the putative enzyme functions, we hypothesised that these mutations trigger a complex response which may be visible at the transcriptional level. This analysis revealed that major changes in gene regulation are taking place in bodyguard (bdg), lacerata (lcr) and fiddlehead (fdh) mutants, massively affecting genes associated with lipid, cell wall and intracellular homeostasis but also with pathogen resistance. Experiment Overall Design: Plants carrying a stable allele of the bodyguard (bdg), lacerata (lcr) and fiddlehead (fdh) mutations, respectively, were grown on soil in parallel to wild type Columbia plants and under controlled growth conditions. Trays were periodically shifted to avoid any position effect and, to increase representativeness of the samples, each sample contains leaf tissue from 15 plants.

2009-10-10 | E-GEOD-15105 | biostudies-arrayexpress

Probing gene misregulation in bodyguard, lacerata and fiddlehead mutants

2009-10-01 | GSE15105 | GEO

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