Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-51215

ABSTRACT: Transcriptome analysis in flavonoid overaccumulating and lacking Arabidopsis.

PROVIDER: E-GEOD-51215 | ExpressionAtlas | 2015-05-11

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-51215-analysis-methods.tsv	Tabular
	E-GEOD-51215-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-51215-configuration.xml	Xml
	E-GEOD-51215-percentile-ranks.tsv	Tabular
	E-GEOD-51215.condensed-sdrf.tsv	Tabular

Items per page:

1 - 5 of 145

Similar Datasets

Arabidopsis thaliana

Project description:Transcriptome analysis in flavonoid overaccumulating and lacking Arabidopsis.

| PRJNA221637 | ENA

Arabidopsis thaliana

Project description:Transcriptome analysis of Arabidopsis plants lacking all three E2F isoforms, E2FA, E2FB, and E2FC

| PRJDB14792 | ENA

Transcriptome analysis in flavonoid overaccumulating and lacking Arabidopsis.

Project description:TranscriptoTranscriptome profiling using DNA microarrays of the aerial parts of the wild-type and other plants was conducted to examine if either MYB overexpression or flavonoid overaccumulation is responsible for the expression of stress-related genes involved in both the biotic and abiotic stress response. Comparative transcriptome analysis using DNA microarray in flavonoid overaccumulating and lacking Arabidopsis.

2013-09-27 | E-GEOD-51215 | biostudies-arrayexpress

Analysis of Arabidopsis transcriptome in response to beta-cyclocitral treatment-Characterization of beta-cyclocitral effects in Arabidopsis thaliana

Project description:cea10-03_cyclocitral - analysis of arabidopsis transcriptome in response to b-cyclocitral treatment - Is beta--cyclocitral a bioactive molecule involved in stress response? - Analysis of Arabidopsis transcriptome in response to b-cyclocitral treatment.

2011-12-01 | GSE33963 | GEO

Transcriptome analysis of Arabidopsis thaliana and Lotus japonicus exposed to arbuscular mycorrhizae

Project description:Key genes involved in symbiosis have been lost in nonmycorrhizal plants such as Arabidopsis thaliana. We studied the effects on gene expression in A. thaliana expressing an abbreviated, functional version of one of genes, the transcription factor Interacting Protein of DMI3 (IPD3-min), under low nutrient conditions in the presence and absence of a mycorrhizal fungi, Rhizophagus. We conducted the same transcriptome analysis with a cyclops-4 knockout mutant in Lotus japonicus to compare with the expression profile of a mycorrhizal host model lacking IPD3.

2023-02-13 | GSE225213 | GEO

Arabidopsis thaliana

Project description:Transcriptome analysis of Arabidopsis

| PRJNA703735 | ENA

Project description:Transcriptome analysis of Arabidopsis

| PRJNA910295 | ENA

Project description:Analysis of Arabidopsis Transcriptome

| PRJNA1002633 | ENA

Analysis of the splicing factor LUC7 in Arabidopsis

Project description:Characterization of an U1 snRNP component (LUC7) in plants through transcriptome analysis of luc7 Arabidopsis mutant and AP-MS for detecting LUC7 interacting partners

2022-02-22 | PXD006127 | Pride

Cell-type specific alternative splicing in the Arabidopsis germline

Project description:During sexual reproduction in flowering plants, the two haploid sperm cells embedded within the cytoplasm of a growing pollen tube are carried to the embryo sac for double fertilization. Pollen development in flowering plants is a dynamic process that encompasses changes at transcriptome and epigenome level. While the transcriptome of pollen and sperm cells in Arabidopsis thaliana is well documented, previous analyses were mostly based on expression at gene level. In-depth transcriptome analysis, particularly the extent of alternative splicing at the resolution of sperm cell and vegetative nucleus was still lacking. Therefore, we performed RNA-seq analysis to generate a spliceome map of Arabidopsis sperm cells and vegetative nuclei isolated from mature pollen grains. Based on our de-novo transcriptome assembly we identified 58039 transcripts, including 9681 novel transcripts, of which 2091were expressed in sperm cells and 3600 in vegetative nuclei. Our data from sperm cell and vegetative nucleus identified 468 genes that were regulated both at gene and splicing level, with many having functions in mRNA splicing, chromatin modification, and protein localization. Moreover, a comparison with egg cell RNA-seq data uncovered sex-specific regulation of transcription and splicing factors. Our study provides novel insights into a gamete specific alternative splicing landscape at unprecedented resolution.

2022-12-14 | GSE201115 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data