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E-GEOD-51704

ABSTRACT: Gene expression profiling of KLF5, GATA4 and GATA6 knock down in YCC3/AGS/KATOIII cell lines

OTHER RELATED OMICS DATASETS IN: PRJNA224584PRJNA150983PRJNA224585PRJNA122965PRJNA144797PRJNA152559PRJNA224586

PROVIDER: E-GEOD-51704 | ExpressionAtlas | 2025-01-24

REPOSITORIES: ExpressionAtlas

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Dataset's files

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			Action	DRS
	E-GEOD-51704-analysis-methods.tsv	Tabular
	E-GEOD-51704-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-51704-configuration.xml	Xml
	E-GEOD-51704-percentile-ranks.tsv	Tabular
	E-GEOD-51704.condensed-sdrf.tsv	Tabular

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Gene expression profiling of KLF5, GATA4 and GATA6 knock down in YCC3/AGS/KATOIII cell lines

Project description:Three transcription factors KLF5, GATA4 and GATA6 are recurrently amplified in multiple gastric cancer cohorts, representing one type of lineage-survival oncogenes in gastric cancer. ChIP-Seq analysis of these three factors in multiple cell lines revealed that significant number of genomic sites are co-occupied by KLF5 and GATA4 and/or GATA6. Integrative analysis of ChIP-Seq and gene expression identified several targets of the three transcription factors in both cell lines and primary tumors, including HNF4A. These results suggest that KLF5, GATA4 and GATA6 interact and co-operate to regulate HNF4A and other genes to promote tumorigenesis in gastric cancer. Gene expression profiling of KLF5, GATA4 and GATA6 knock down in YCC3/AGS/KATOIII cells

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