Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-59814

ABSTRACT: RNA-seq of ACS (acetyl-CoA synthetase)-deficient yeast strain IMY104 engineered to express and assemble a pyruvate dehydrogenase complex (PDH) from Enterococcus faecalis in its cytosol against an ACS+ reference strain CEN.PK113-7D

OTHER RELATED OMICS DATASETS IN: PRJNA256305

PROVIDER: E-GEOD-59814 | ExpressionAtlas | 2019-05-14

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-59814-analysis-methods.tsv	Tabular
	E-GEOD-59814-analytics.tsv	Tabular
	E-GEOD-59814-analytics.tsv.undecorated	Tabular
	E-GEOD-59814-analytics.tsv.undecorated.unrounded	Tabular
	E-GEOD-59814-analytics.tsv.unrounded	Tabular

Items per page:

1 - 5 of 211

Similar Datasets

Genetic dissection of chromatin regulators reveals the INO80 chromatin remodeling complex as a key metabolic regulator utilizing TORC1 and histone acetylation pathways

Project description:We performed RNA-seq in wild-type yeast, a strain lacking INO80, and a strain lacking ARP5, central components of the INO80 chromatin remodelling complex, treated with rapamycin

2018-02-02 | GSE103468 | GEO

Hfq regulated genes in Pseudomonas chlororaphis 30-84

2016-07-22 | GSE49425 | GEO

Phenazines regulated genes in Pseudomonas chlororaphis 30-84

Project description:Pseudomonas chlororaphis strain 30-84 is an effective biological control agent against take-all disease of wheat. In this study, we conducted an RNA-seq analysis by comparing the wild type strain, PCA and O star with a phenazine deficient mutant. RNA-seq analysis identified over 800 genes differentially regulated by phenazines.

2017-02-10 | GSE61200 | GEO

INO80 Chromatin Remodelling Coordinates Metabolic Homeostasis with Cell Division

Project description:We performed RNA-seq across the yeast metabolic cycle (YMC) in wild-type and a strain lacking ARP5, a central component of the INO80 chromatin remodelling complex. We also perform ATAC-seq on the same samples to examine chromatin architecture across the YMC.

2018-01-02 | GSE101290 | GEO

Host-informed molecular engineering improves antigen quality and enables integrated manufacturing of a trivalent subunit vaccine [Ribo-seq]

Project description:We analyzed total RNA and ribosome footprints collected from a K. phaffii strain secreting the VP8-P[6] serotype of the rotavirus antigen and compared against a strain secreting the VP8-P[4] serotype for reference.

2021-05-05 | GSE159336 | GEO

Histone crotonylation links metabolism with gene expression

Project description:We performed RNA-seq across the yeast metabolic cycle (YMC) in wild-type and a strain containing a point mutant in TAF14 (W81A) that abolishes binding to acylated histones. We also performed ChIPseq using antibodies directed against histone H3K9acetyl, histone H3K9crotonyl, histone H3 across the wild-type YMC.

2019-08-28 | GSE120019 | GEO

The diadenosine tetraphosphate hydrolase ApaH is crucial for Pseudomonas aeruginosa pathogenicity

Project description:The role of the intracellular signaling molecule diadenosine tetraphosphate (Ap4A) has not so far been investigated in Pseudomonas aeruginosa. To fill this gap, we performed RNA sequencing (RNA-seq) analysis to compare the transcriptome of the reference strain P. aeruginosa PAO1 and an isogenic deletion mutant (ΔapaH) which is deficient in the Ap4A hydrolysing enzyme ApaH and accumulates high intracellular levels of Ap4A.

2024-08-07 | GSE255863 | GEO

Project description:MMS-induced mutation in Shu-complex deficient yeast

| PRJNA694993 | ENA

Hfq regulated genes in Pseudomonas chlororaphis 30-84

Project description:Pseudomonas chlororaphis strain 30-84 is an effective biological control agent against take-all disease of wheat. In this study, we conducted an RNA-seq analysis by comparing the wild type strain with a Hfe deficient mutant. RNA-seq analysis identified over 900 genes differentially regulated by Hfq. A total of 4 samples were analyzed in AB medium + 2% casamino acids, Pseudomonas chlororaphis wild type strain (2 replicates); Pseudomonas chlororaphis ZN mutant (2 replicates).

2016-07-22 | E-GEOD-49425 | biostudies-arrayexpress

Transcriptome analysis of PPN1 knock-out and overproducing yeast strains grown in control and manganese excess media

Project description:We report RNA-Seq data of S.cerevisiae PPN1 knock-out yeast strain and PPN1 overproducing transformant yeast strain grown to logarithmic stage in control medium and in the medium containing 5mM manganese.

2018-11-28 | GSE122987 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data