Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-60183

ABSTRACT: Gene expression in the epidermis including guard cells of phot1 phot2 and pGC1::SOC1-GFP/phot1 phot2

OTHER RELATED OMICS DATASETS IN: PRJNA257692

PROVIDER: E-GEOD-60183 | ExpressionAtlas | 2019-05-14

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-60183-analysis-methods.tsv	Tabular
	E-GEOD-60183-analytics.tsv	Tabular
	E-GEOD-60183-analytics.tsv.undecorated	Tabular
	E-GEOD-60183-analytics.tsv.undecorated.unrounded	Tabular
	E-GEOD-60183-analytics.tsv.unrounded	Tabular

Items per page:

1 - 5 of 23

Similar Datasets

Homo sapiens

Project description:Gene expression in HEK293 cells with hSNRK-GFP or GFP

| PRJNA143969 | ENA

RNA-seq profiling of NKX6.1 reporter iPSC lines for isolation and analysis of functionally relevant neuronal and pancreas populations

Project description:We generated human induced pluripotent stem cell (iPSC) lines with a GFP reporter inserted in the endogenous NKX6.1 locus. Characterisation of the reporter lines demonstrated faithful GFP labelling of NKX6.1 expression during pancreas and motor neuron differentiation. We performed three independent in vitro differentiations towards the pancreatic endocrine lineage. We FACS-purified GFP positive and negative cells from stage 7 cultures, and generated Smart-Seq2 RNA-sequencing libraries for the pre-sorted cells, as well as the two GFP-sorted cell populations. Gene expression profiling by RNA-sequencing reveals that the NKX6.1-positive population closely resembles mature human beta cells and the functional evaluation of purified populations shows that the glucose-responsive beta-like cells are enriched within the NKX6.1-positive population. These reporter lines provide a valuable resource to the scientific community for the derivation of functional relevant pancreas and neuronal cell subtypes.

| EGAS00001002802 | EGA

ena-DATASET-WTCHG-18-01-2018-10:47:14:003-216 - samples

| EGAD00001003911 | EGA

Mus musculus

Project description:Gene expression profiles of mouse Blimp1 +/gfp and Blimp1 gfp/gfp regulatory T cells

| PRJNA137577 | ENA

Mus musculus

Project description:Expression profile in bone marrow Nestin-GFP cells

| PRJNA126885 | ENA

Identification of RNG140 (caprin2)-associated proteins in CHO cells

Project description:Regulation of gene expression at the translational level is key to determining cell fate and function. An RNA-binding protein RNG140 (caprin2) plays a role in cell differentiation such as eye lens development and has been reported to function in translational regulation. To identify RNG140-associated proteins, we generated CHO cells stably expressing GFP and RNG140-GFP, and performed immunoprecipitation (IP) with GFP antibody from those cells followed by mass spectrometry. We identified about 400 proteins specifically co-immunoprecipitated with RNG140-GFP but not with GFP. Gene ontology (GO) enrichment analysis revealed that the eIF3 subunit proteins and small ribosomal subunit proteins were significantly enriched in the RNG140-associated complex.

2020-08-17 | PXD019040 | Pride

Homo sapiens

Project description:Gene expression profiling of GFP-positive cancer stem-like cells(CSLC) derived from MDA-MB453 cells, compared with GFP-negative non-cancer stem cells (non-CSLC).

| PRJNA185479 | ENA

Homo sapiens

Project description:Expression data from TOP-GFP sorted colon cancer cells

| PRJNA146385 | ENA

Schizosaccharomyces pombe

Project description:Tiling ChIP-CHIP Ssn6-GFP, Tp11-GFP, Tup12-GFP; Hst4 vs WT Expression

| PRJNA153235 | ENA

Biomarks of Resistance to Cetuximab in Colorectal Cancer

Project description:Interventions: A group:Before using cetuximab;B group:After progression of disease:no Primary outcome(s): KRAS gene sequence;NRAS gene sequence;BRAF gene sequence;PIK3CA gene sequence;EGFR gene sequence;EGFR gene copy numbers;EGFR expression;Her2 expression;c-Met expression;PTEN expression Study Design: historical control

| 2671639 | ecrin-mdr-crc

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data