Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-77240

ABSTRACT: Transcription profiling by high throughput sequencing of a grape transgenic line overexpressing VvERF045

PROVIDER: E-GEOD-77240 | ExpressionAtlas | 2017-02-20

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-77240-analysis-methods.tsv	Tabular
	E-GEOD-77240-analytics.tsv	Tabular
	E-GEOD-77240-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-77240-configuration.xml	Xml
	E-GEOD-77240-g2_g1-mvaPlot.png	Other

Items per page:

1 - 5 of 22

Similar Datasets

Differential gene expression in salicylic acid-deficient transgenic plants overexpressing StTGA2.1 after viral infection.

Project description:The general aim was to better understand the role of StTGA2.1 in plant immunity by transcriptional profiling of plants overexpressing the salicylic acid pathwas related TGA transcription factor StTGA2.1 after infection with potato virus Y (PVY). Potato non-transgenic cultivar Rywal (NT), Rywal-NahG (NahG), a transgenic line unable to accumulate SA due to salicylate hydroxylase expression, and a transgenic Rywal-NahG line inducibly overexpressing StTGA2.1 (TGA2.1-NahG) using the glucocorticoid-system, in which target gene expression can be controlled by external application of dexamethasone (DEX), were used. The leaves of three plants per genotype were infected with either PVY or mock-inoculum and subsequently treated with DEX. Additionally, three TGA2.1-NahG PVY-infected or mock-inoculated plants were not treated with DEX as control. After four days, PVY infection symtoms appeared as small regions of necrotic tissue called lesions. Tissue sections, containing lesions and their immediate surrounding area, were sampled, allowing us to focus on PVY-affected cells. Total RNA was isolated, DNase treated and sent for library prep and high-throughput sequencing.

2022-12-14 | GSE196078 | GEO

Identification of transcriptional regulatory networks that function in early response to cold stress in Vitis amurensis

Project description:We report the RNAseq technologies for high-throughput profiling of accessible chromatin regions and differentially expressed genes after cold treatment in Vitis amurensis, respectively. By combining the RNAseq results, we built putative transcriptional regulatory networks involving in cold responses in grape, and found some new transcription factors that may participate in cold responses in grape.

2021-12-08 | GSE166247 | GEO

Exploration of Alternative Splicing Events in Ten Different Grapevine Cultivars

Project description:We performed a comprehensive high-throughput transcript sequencing of ten different grapevine cultivars, which resulted in the first high coverage atlas of the grape berry transcriptome.

2015-09-04 | E-MTAB-4350 | biostudies-arrayexpress

RNA-sequencing of MHC-cycD2 transgenic mice after Transverse Aortic Constriction and Aortocaval Shunt surgery

Project description:Expression profiling by high throughput sequencing of mice overexpressing cyclin D2 compared to WT control, and of TG mice after pressure and volume overload

2017-09-27 | GSE103545 | GEO

High throughput gene expression data of fibroblast growth factor 19-overexpressing SK-MES-1 cells and control cells

Project description:The lung squamous cell carcinoma cell line SK-MES-1 was used to construct fibroblast growth factor 19-overexpressing stable cells and control cells, and then the mRNA levels of the two cells were detected by high-throughput sequencing

2024-06-30 | GSE207588 | GEO

Mature Arabidopsis leaves: RAP2.6L overexpressing vs wild-type (Ws)

Project description:Transcriptional profiling of Arabidopsis thaliana, comparing control wild-type (ecotype Wassilewskija, Ws) leaves with leaves from transgenic plants overexpressing the transcription factor RAP2.6L under control of the cauliflower mosaic virus 35S promoter (RAP2.6L-OX; this line was originally described in Krishnaswamy et al (2010)).

2017-06-30 | GSE90601 | GEO

To explore the relationship between new gene expression / mutation and survival of patients in colorectal cancer

Project description:Interventions: Case vs control:No Primary outcome(s): High-throughput sequencing Study Design: Case-Control study

| 2676067 | ecrin-mdr-crc

RAMPAGE dataset for the human K562 cell line

Project description:5'-complete cDNA sequencing on ribosome-depleted total RNA from the human K562 cell line. Provides high-quality, genome-wide single-base resolution profiling of transcription start sites and their expression levels. This dataset represents a whole-genome, single-base resolution profiling of transcription start site (TSS) expression in the human K562 cell line. These profiles were established using RAMPAGE, a high-throughput, high-accuracy 5'-complete cDNA sequencing method implemented on the Illumina platform. The data was analyzed using custom scripts and algorithms that are all available upon request.

2012-08-30 | E-GEOD-36200 | biostudies-arrayexpress

Transgenic AhDGR-OE vs Wild type Col 0 Arabidopsis plants

Project description:Transcriptional profiling of Arabidopsis rossette leaves comparing WT Col-0 with a transgenic line overexpressing AhDGR gene from Amaranthus hypochondriacus.

2016-11-30 | GSE84726 | GEO

Transgenic Ah24-OE vs Wild type Col 0 Arabidopsis plants

Project description:Transcriptional profiling of Arabidopsis rossette leaves comparing WT Col-0 with a transgenic line overexpressing Ah24 gene from Amaranthus hypochondriacus.

2015-06-26 | GSE70272 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data