Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-MTAB-4994

ABSTRACT: Identification of drought responsive genes at reproductive stage in upland rice variety Nagina22 through comparative microarray analysis

PROVIDER: E-MTAB-4994 | ExpressionAtlas | 2016-08-08

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-MTAB-4994-analysis-methods.tsv	Tabular
	E-MTAB-4994-atlasExperimentSummary.Rdata	Rdata
	E-MTAB-4994-configuration.xml	Xml
	E-MTAB-4994-percentile-ranks.tsv	Tabular
	E-MTAB-4994.condensed-sdrf.tsv	Tabular

Items per page:

1 - 5 of 48

Similar Datasets

Expression data from rice varieties IRAT109 and ZS97 for drought stress treatment in flag leaves

2011-11-05 | GSE25176 | GEO

E-CURD-26

Project description:Exploring the mechanism of C4 photosynthetic differentiation through a unified comparative analysis of maize and rice leaf transcriptomes - rice dataset

2020-04-03 | E-CURD-26 | ExpressionAtlas

Genetic Engineering of indica Rice with AtDREB1A Gene for enhanced Abiotic Stress Tolerance

Project description:Global gene expression analysis of AtDREB1A transgenic rice line (TL4) at reproductive stage under drought stress was conducted using microarray to explore the drought stress-responsive transcription pathways. Drought stress was imposed at late vegetative stage till booting of the plants. Flag leaf was collected on 14th day of the drought stress. Drought stress was imposed on T3 plants of two homozygous transgenic rice events of PS2 and NT plants by withholding irrigation for 14 days in the National Phytotron Facility, IARI.

2018-04-29 | E-MTAB-5700 | biostudies-arrayexpress

Expression data from rice varieties IRAT109 and ZS97 for drought stress treatment in flag leaves

Project description:Comparative transcriptional profiling of two contrasting rice genotypes,IRAT109 (drought-resistant japonica cultivar) and ZS97 (drought-sensitive indica cultivar), under drought stress during the reproductive stage Four samples with RWC in the range of 94–95% (no stress, D0), 83–88% (slight drought in which leaves were slightly rolled, D1), 74–78% (moderate drought in which about half of each leaf was rolled, D2), and 65–69% (severe drought in which all leaves were completely rolled, D3) were collected for expression profiling analysis using an Affymetrix GeneChip.

2011-11-05 | E-GEOD-25176 | biostudies-arrayexpress

A resource for systems analysis of transcriptional modules involved in drought response in rice

2016-07-20 | GSE81253 | GEO

A resource for systems analysis of transcriptional modules involved in drought response in rice

Project description:The severity of impact of drought on crops is contingent on the developmental stage of the plant, with the most sensitive stage being the reproductive stage. Hence, gene expression profiling has been used to understanding drought response and resistance mechanism in rice. Here we present drought transcriptomes of rice in three developmental stages and gain insights into the processes and regulatory mechanisms involved in common and stage specific drought responses. Total RNA was isolated from the rice seedlings, vegetative (V4) and reproductive (R4) tissues of both control and stress treated plants for hybridization on Affymetrix microarrays. Two independent replicates for seedling and reproductive stages, and three replicates for vegetative stages were generated, for both control and stress samples. For drought treatments, plants were gradually subjected to field drought conditions in order to reach 50% field capacity (FC) by regulating water supply, whereas control plants were maintained at 100% FC.

2016-07-20 | E-GEOD-81253 | biostudies-arrayexpress

Identification of drought responsive genes at reproductive stage in upland rice variety Nagina22 through comparative microarray analysis

Project description:In the current study we did microarray of upland rice cultivar Nagina22 for drought stress at reproductive stage (panicle initiation) and analyzed drought stress responsive genes. We have taken flag leaf for our study as it is most essential organ for photosynthesis in rice. Normal watering Vs Drought Stress Flag leaf of Control (Three biological replicates) plant of Nagina22: C1, C2, C3 Flag leaf of drought stressed (Three biological replicates) plant of Nagina 22: S1, S2, S3

2017-12-25 | E-MTAB-4994 | biostudies-arrayexpress

E-CURD-27

Project description:Exploring the mechanism of C4 photosynthetic differentiation through a unified comparative analysis of maize and rice leaf transcriptomes - maize dataset

2020-04-03 | E-CURD-27 | ExpressionAtlas

E-GEOD-45724

Project description:Microarray analysis of transcriptional responses to alkali stress in two rice genotypes

2016-01-08 | E-GEOD-45724 | ExpressionAtlas

E-MTAB-3230

Project description:Comparative transcriptome study of enhanced water stress tolerant (ewst1) mutant of rice variety Nagina22

2015-02-05 | E-MTAB-3230 | ExpressionAtlas