Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-MTAB-6564

ABSTRACT: RNA-Seq of control, RNPS1 knockdown and rescue in HeLa cells

PROVIDER: E-MTAB-6564 | ExpressionAtlas | 2019-09-09

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-MTAB-6564-analysis-methods.tsv	Tabular
	E-MTAB-6564-analytics.tsv	Tabular
	E-MTAB-6564-atlasExperimentSummary.Rdata	Rdata
	E-MTAB-6564-configuration.xml	Xml
	E-MTAB-6564-g4_g1-mvaPlot.png	Other

Items per page:

1 - 5 of 44

Similar Datasets

Re-analysis of E-MTAB-1585

Project description:Raw data from E-MTAB-1585 was normalized by using reads per million. https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1585/ Strand specific RNA-Seq data E-MTAB-1585 was normalized and subtracted control from knockdown to generate tracks that more clearly displayed the unusual pattern of RNA expression caused by knockdown of 7SK. The following wig files were generated from multiple samples (i.e.raw data files), as indicated in the 'readme.txt' file. 7sk_3p_KD_norm.wig: 7SK 3P Knockdown normalized 7sk_3p_KDF_norm.wig: 7SK 3P Knockdown normalized (Forward) 7sk_3p_KDR_norm.wig: 7SK 3P Knockdown normalized (Reverse) 7sk_5p_KD_norm.wig: 7SK 5P Knockdown normalized 7sk_5p_KDF_norm.wig: 7SK 5P Knockdown normalized (Forward) 7sk_5p_KDR_norm.wig: 7SK 5P Knockdown normalized (Reverse) 7sk_Control_norm.wig: 7SK Control normalized 7sk_ControlF_norm.wig: 7SK Control normalized (Forward) 7sk_ControlR_norm.wig: 7SK Control normalized (Reverse) 7sk_3p_KDF-ControlF.wig: 7SK 3P Knockdown-Control (Forward) 7sk_3p_KDR-ControlR.wig: 7SK 3P Knockdown-Control (Reverse) 7sk_5p_KDF-ControlF.wig: 7SK 5P Knockdown-Control (Forward) 7sk_5p_KDR-ControlR.wig: 7SK 5P Knockdown-Control (Reverse)

2013-09-19 | E-GEOD-50860 | biostudies-arrayexpress

RNA-Seq of control, RNPS1 knockdown and rescue in HeLa cells

Project description:RNA-Seq of control, RNPS1 knockdown and rescue in HeLa cells

| PRJEB25518 | ENA

Homo sapiens

Project description:Genome wide DRIP-seq in control knockdown HeLa cells

| PRJNA360822 | ENA

NAT10-mediated RNA acetylation enhances HNRNPUL1 mRNA stability to contribute cervical cancer progression

Project description:To investigate the principal mechanism of NAT10 in cervical cancer, RNA-seq was accomplished in SiHa and Hela cells with NAT10 knockdown and in control cells

2023-05-10 | GSE231762 | GEO

Fip1 iCLIP-seq in Hela cells without treatment or treated with NC ASO, snoRD50a ASO

Project description:We aimed to compare the Fip1/RNA interaction at transcriptomic level upon snoRD50a knockdown. To this goal, we utilized Fip1 iCLIP-seq protocol in both control and snoRD50a KD hela cells.

2017-07-01 | GSE98220 | GEO

RNA-Seq of HeLa cells treated with siTFIP11

Project description:RNA-Seq of HeLa cells treated with siTFIP11 or control siRNA to investigate the effect of TFIP11 knockdown on mRNA as part of a larger study on the function of TFIP11.

2021-09-22 | GSE156388 | GEO

microRNA-seq of miRNAs from control and DIS3L knockdown HeLa cells

Project description:microRNA-seq of miRNAs from control and DIS3L knockdown HeLa cells

| PRJEB30474 | ENA

RNA-Seq of HeLa cells treated with siDHX15

Project description:RNA-Seq of HeLa cells treated with siDHX15 or control siRNA to investigate the effect of DHX15 knockdown on mRNA as part of a larger study on the function of TFIP11 and DHX15.

2021-09-22 | GSE171446 | GEO

Small RNA-Seq of HeLa cells treated with siTFIP11

Project description:Small RNA-Seq of HeLa cells treated with siTFIP11 or control siRNA to investigate the effect of TFIP11 knockdown on small RNA (snRNA, snoRNA, etc.) as part of a larger study on the function of TFIP11.

2021-09-22 | GSE156389 | GEO

Project description:RNA-seq of HeLa cells of control and HeLa cells treated with galaxamide.

| PRJNA947754 | ENA