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E-MTAB-9184

ABSTRACT: RNAseq of colon intestinal epithelium extracted from mice infected with Citrobacter rodentium

PROVIDER: E-MTAB-9184 | ExpressionAtlas | 2023-06-16

REPOSITORIES: ExpressionAtlas

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Dataset's files

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			Action	DRS
	E-MTAB-9184-analysis-methods.tsv	Tabular
	E-MTAB-9184-analytics.tsv	Tabular
	E-MTAB-9184-apply_fixes_zooma_mappings.done	Other
	E-MTAB-9184-atlasExperimentSummary.Rdata	Rdata
	E-MTAB-9184-configuration.xml	Xml

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1 - 5 of 24

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E-MTAB-9183

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RNAseq of colon intestinal epithelium extracted from mice infected with Citrobacter rodentium

Project description:RNAseq of colon intestinal epithelium extracted from mice infected with Citrobacter rodentium

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E-MTAB-9182

Project description:RNAseq of small intestinal organoids from mice treated with the cytokines IFNG, IL-13 and IL-22 for 24 hours

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Single-cell RNAseq of the murine intestinal epithelium infected with rotavirus

Project description:To understand the impact of murine rotavirus infection on mouse intestinal epithelial tissue, we isolated total intestinal epithelium from uninfected and infected C57Bl6J mice and performed single-cell RNAseq.

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RNAseq of colon intestinal epithelium extracted from mice infected with Citrobacter rodentium

Project description:The intestinal epithelium is our first line of defense against infections of the gut and the plasticity in cellular differentiation of the intestinal epithelium is an important part of this response. Here we sequenced the colon intestinal epithelium from mice infected with Citrobacter rodentium to determine how the intestinal epithelium adapts in the context of an infection. By comparing these data to small intestinal organoids treated with cytokines (see related accessions) we determine that the intestinal epithelial response to C. rodentium infection correspond to a type III infection driven by IL22.

2022-05-08 | E-MTAB-9184 | biostudies-arrayexpress

E-MTAB-5952

Project description:RNAseq of whole ovarian follicles from young and old mice.

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Gene expression profile of the intestines at the different locations

Project description:We performed RNA-seq analyses of intestinal epithelium using RNA extract from different intestinal locations: the cecum, the proximal colon, and the distal colon in different mice. Our results have revealed key pathway differences in these mice at different intestinal locations.

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