Dataset Information

Lu2021-Genome scale metabolic models for yeast species of clade CUG-Ser2

ABSTRACT: This is genome-scale metabolic model of Ascoidea rubescens as the representative yeast species for the clade CUG-Ser2. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109130005. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Ascoidea asiatica; Ascoidea rubescens; Saccharomycopsis malanga; Saccharomycopsis capsularis. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.

SUBMITTER: feiran

PROVIDER: MODEL2109130005 | BioModels | 2021-11-01

REPOSITORIES: BioModels

ACCESS DATA

Dataset's files

Source:

			Action	DRS
	MODEL2109130005?filename=Ascoidea_asiatica.xml	Xml
	MODEL2109130005?filename=CUG-Ser2.zip	Other

Items per page:

1 - 2 of 2

Publications

Isolation of the ARO1 cluster gene of Saccharomyces cerevisiae.

Larimer F W FW Morse C C CC Beck A K AK Cole K W KW Gaertner F H FH

Molecular and cellular biology 19830901 9

The AROl cluster gene was isolated by complementation in Saccharomyces cerevisiae after transformation with a comprehensive yeast DNA library of BamHI restriction fragments inserted into the shuttle vector YEp13. Most of the transformants exhibited the expected episomal inheritance of the ARO+ phenotype; however, one stable transformant has been shown to be an integration of the AROl fragment and the vector YEp13 at the arol locus. The insert containing AROl is a 17.2-kilobase pair (kbp) BamHI f ...[more]

PMID: 6355828

Publication: 1/352

Similar Datasets

Project description:This is genome-scale metabolic model of Yarrowia lipolytica as the representative yeast species for the clade Dipodascaceae_Trichomonascaceae. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109130007. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Blastobotrys adeninivorans; Starmerella apicola; Wickerhamiella infanticola; Wickerhamiella versatilis; Geotrichum candidum; Nadsonia fulvescens var. elongata; Saprochaete clavata; Starmerella bombicola; Sugiyamaella lignohabitans; Wickerhamiella domercqiae; Yarrowia deformans; Yarrowia keelungensis; Yarrowia lipolytica; Spencermartinsiella europaea; Nadsonia fulvescens var. fulvescens; Wickerhamiella cacticola; Diddensiella caesifluorescens; Dipodascus albidus; Blastobotrys serpentis; Blastobotrys raffinosifermentans; Blastobotrys proliferans; Blastobotrys peoriensis; Blastobotrys nivea; Blastobotrys muscicola; Blastobotrys mokoenaii; Blastobotrys americana; Deakozyma indianensis; Zygoascus ofunaensis; Zygoascus meyerae; Candida incommunis; Candida hispaniensis; Yarrowia bubula; Yarrowia divulgata; Middelhovenomyces tepae; Groenewaldozyma salmanticensis; Magnusiomyces tetraspermus; Dipodascus geniculatus. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.

Project description:This is genome-scale metabolic model of Komagataella pastoris as the representative yeast species for the clade Pichiaceae. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109130009. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Ambrosiozyma kashinagacola; Ambrosiozyma monospora; Brettanomyces anomalus; Candida arabinofermentans; Candida boidinii; Candida sorboxylosa; Candida succiphila; Brettanomyces bruxellensis; Komagataella pastoris; Kuraishia capsulata; Ogataea methanolica; Ogataea parapolymorpha; Ogataea polymorpha; Pichia membranifaciens; Ogataea henricii; Ambrosiozyma ambrosiae; Citeromyces matritensis; Ambrosiozyma vanderkliftii; Brettanomyces custersianus; Komagataella populi; Saturnispora hagleri; Saturnispora mendoncae; Saturnispora saitoi; Saturnispora serradocipensis; Saturnispora silvae; Saturnispora zaruensis; Pichia occidentalis; Pichia norvegensis; Pichia nakasei; Pichia kudriavzevii; Pichia heedii; Pichia exigua; Martiniozyma abiesophila; Ogataea nitratoaversa; Ogataea populialbae; Ogataea zsoltii; Ogataea trehalophila; Ogataea trehaloabstinens; Ogataea ramenticola; Ogataea pini; Ogataea pilisensis; Ogataea philodendri; Ogataea glucozyma; Ogataea kodamae; Ogataea methylivora; Ogataea minuta; Ogataea naganishii; Ogataea nonfermentans; Kuraishia ogatae; Kuraishia molischiana; Komagataella pseudopastoris; Ambrosiozyma oregonensis; Ambrosiozyma philentoma; Citeromyces hawaiiensis; Citeromyces siamensis; Ambrosiozyma maleeae; Ambrosiozyma pseudovanderkliftii; Pichia terricola; Saturnispora dispora; Kregervanrija delftensis; Kregervanrija fluxuum. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.