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Sl2183 - Tomato metabolic model

ABSTRACT: Sl2183 is an updated version of the previous tomato metabolic model (iHY3410), with additional reactions and metabolites, IDs converted into the BiGG nomenclature and biomass reactions for leaf, stem and root, allowing to generate a multi-organ model (see Gerlin et al., Plant Physiol. for additional information).

SUBMITTER: Ludovic Cottret

PROVIDER: MODEL2111120001 | BioModels | 2022-04-07

REPOSITORIES: BioModels

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Publications

A multi-organ metabolic model of tomato predicts plant responses to nutritional and genetic perturbations.

Gerlin Léo L Cottret Ludovic L Escourrou Antoine A Genin Stéphane S Baroukh Caroline C

Plant physiology 20220301 3

Predicting and understanding plant responses to perturbations require integrating the interactions between nutritional sources, genes, cell metabolism, and physiology in the same model. This can be achieved using metabolic modeling calibrated by experimental data. In this study, we developed a multi-organ metabolic model of a tomato (Solanum lycopersicum) plant during vegetative growth, named Virtual Young TOmato Plant (VYTOP) that combines genome-scale metabolic models of leaf, stem and root an ...[more]

PMID: 34907432

Publication: 1/2

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