Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Nagarajan2013 - C. ljungdahlii (iHN637)

ABSTRACT: FROG and miniFROG Reports for the organism C. ljungdahlii. The model (iHN637) originates from BiGG Models Database: A Database of Genome-Scale Metabolic Models (http://bigg.ucsd.edu/). Copyright © 2019 The Regents of the University of California To cite BiGG Models Database, please use: King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models (2016) Nucleic Acids Research 44(D1):D515-D522. doi:10.1093/nar/gkv1049

SUBMITTER: Tanisha Malpani

PROVIDER: MODEL2406270003 | BioModels | 2024-10-15

REPOSITORIES: BioModels

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	MODEL2406270003?filename=iHN637.omex	Other
	MODEL2406270003?filename=iHN637_miniFROG.xlsx	Xlsx

Items per page:

1 - 2 of 2

Similar Datasets

Broddrick2016 - Synechococcus elongatus PCC 7942 (iJB785)

Project description:FROG and miniFROG Reports for the organism Synechococcus elongatus PCC 7942. These models originate from BiGG Models Database: A Database of Genome-Scale Metabolic Models (http://bigg.ucsd.edu/). Copyright © 2019 The Regents of the University of California To cite BiGG Models Database, please use: King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models (2016) Nucleic Acids Research 44(D1):D515-D522. doi:10.1093/nar/gkv1049

2024-10-15 | MODEL2408040006 | BioModels

Charusanti2011 - Y. pestis (iPC815)

Project description:FROG and miniFROG Reports for the organism Yersinia pestis. These models originate from BiGG Models Database: A Database of Genome-Scale Metabolic Models (http://bigg.ucsd.edu/). Copyright © 2019 The Regents of the University of California To cite BiGG Models Database, please use: King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models (2016) Nucleic Acids Research 44(D1):D515-D522. doi:10.1093/nar/gkv1049

2024-10-15 | MODEL2408040007 | BioModels

Shiratsubaki2020 - T. cruzi (iIS312)

Project description:FROG and miniFROG Reports for the organism Trypanosoma cruzi. These models originate from BiGG Models Database: A Database of Genome-Scale Metabolic Models (http://bigg.ucsd.edu/). Copyright © 2019 The Regents of the University of California To cite BiGG Models Database, please use: King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models (2016) Nucleic Acids Research 44(D1):D515-D522. doi:10.1093/nar/gkv1049

2024-10-15 | MODEL2408050002 | BioModels

Norsigian2018 - A. baumannii (iCN718)

Project description:FROG and miniFROG Reports for the organism A. baumannii. The model (iCN718) originates from BiGG Models Database: A Database of Genome-Scale Metabolic Models (http://bigg.ucsd.edu/). Copyright © 2019 The Regents of the University of California To cite BiGG Models Database, please use: King ZA, Lu JS, Dräger A, Miller PC, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, and Lewis NE. BiGG Models: A platform for integrating, standardizing, and sharing genome-scale models (2016) Nucleic Acids Research 44(D1):D515-D522. doi:10.1093/nar/gkv1049

2024-10-15 | MODEL2406270001 | BioModels

Oryzias melastigma isolate:bigg-433

Project description:Oryzias melastigma isolate:bigg-433 Genome sequencing and assembly

| PRJNA556761 | ENA

Verticillin A is a selective HMTase inhibitor that inhibit H3K9 methylation to overcome chemoresistance of human colon carcinoma

Project description:We have determined that verticillin A is a histone methyltransfease inhibitor that selectively inhibits human SUV39H1, SUV39H2, G9a and GLP to inhibit H3K9 methylation in human colon cancer cells. The objective here is to identify verticillin A target genes in human colon cancer cells. 5-FU-resistant human colon carcinoma cell lines LS411N-5FU-R was established from the metastatic human colon carcinoma cell line LS411N. LS411N-5FU-R cells were cultured in the absence or presence of verticillin A (50 nM) for 3 days and used for RNA lsolation. DNA microarray analysis was done in replicates in the Georgia Regents University Cancer Center Genomic Core Facility.

2015-04-01 | E-GEOD-51262 | biostudies-arrayexpress

Project description:Standardizing methods for characterizing the urobiome in a canine model

| PRJNA1109516 | ENA

NEXSON

Project description:Standardizing chromatin research: a simple and universal method for ChIP-seq

| PRJEB7177 | ENA

Project description:Standardizing methods for shotgun metagenomics of the urobiome in a canine model

| PRJNA1123238 | ENA

Mechanical stress through growth on stiffer substrates has only mild impacts on animal health and longevity in C. elegans

Project description:Mechanical stress is a measure of internal resistance exhibited by a body or material when external forces, such as compression, tension, bending, etc. are applied. The study of mechanical stress on health and aging is a continuously growing field, as major changes to the extracellular matrix and cell-to-cell adhesions can result in dramatic changes to tissue stiffness during aging and diseased conditions. For example, during normal aging, many tissues including the ovaries, skin, blood vessels, and heart exhibit increased stiffness, which can result in a significant reduction in function of that organ. As such, numerous model systems have recently emerged to study the impact of mechanical and physical stress on cell and tissue health, including cell-culture conditions with matrigels and other surfaces that alter substrate stiffness and ex vivo tissue models that can apply stress directly to organs like muscle or tendons. Here, we sought to develop a novel method in an in vivo, model organism setting to study the impact of mechanical stress on aging, by increasing substrate stiffness in solid agar medium of C. elegans. To our surprise, we found shockingly limited impact of growth of C. elegans on stiffer substrates, including limited effects on cellular health, gene expression, organismal health, stress resilience, and longevity. Overall, our studies reveal that altering substrate stiffness of growth medium for C. elegans have only mild impact on animal health and longevity; however, these impacts were not nominal and open up important considerations for C. elegans biologists in standardizing agar medium choice for experimental assays.

2024-04-05 | E-MTAB-13938 | biostudies-arrayexpress