Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of pig muscle longissimus dorsi sample from F2 animals

ABSTRACT: In this study, we used correlation analysis of the expression profiles and drip loss to produce a list of functional candidate genes under the assumption that genes with strong correlation between their expression values and drip belong to pathways or networks relevant for the control of the trait. Expression QTL analyses for transcripts showing trait dependent expression were done in order to identify genes which show trait associated expression, map to pQTL regions, and exhibit cis regulation. Experiment Overall Design: 74 F2 animals of a resource population based on the breeds Duroc and Pietrain known to differ in meat quality and quantity traits were hybridized to Affymetrix Porcine Genome Arrays.

ORGANISM(S): Sus scrofa

SUBMITTER: Klaus Wimmers

PROVIDER: E-GEOD-10204 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Gene expression data from Muscle Longissimus dorsi sample of F2 animals

Project description:In this study, we used correlation analysis of the expression profiles and drip loss to produce a list of functional candidate genes under the assumption that genes with strong correlation between their expression values and drip belong to pathways or networks relevant for the control of the trait. Expression QTL analyses for transcripts showing trait dependent expression were done in order to identify genes which show trait associated expression, map to pQTL regions, and exhibit cis regulation. Keywords: Corrrelation and association

2009-01-01 | GSE10204 | GEO

Transcription profiling of pig muscle longissimus dorsi sample of f2 animals, T-test paired and SAM

Project description:To identify biological processes as well as molecular markers for drip loss, the transcriptomes of logissimus dorsi from 6 sib pair of F2 animals Experiment Overall Design: 12 F2 animals of a resource population based on the breeds Duroc and Pietrain known to differ in meat quality and quantity traits were hybridized to Affymetrix Porcine Genome Arrays

2009-01-14 | E-GEOD-11193 | biostudies-arrayexpress

Gene expression data from muscle sample of pig commercial herd Pix(DLxDE).

Project description:In this study, we used correlation analysis of the expression profiles and carcass traits to produce a list of functional candidate genes under the assumption that genes with strong correlation between their expression values and drip belong to pathways or networks relevant for the control of the trait. Expression QTL analyses for transcripts showing trait dependent expression were done in order to identify genes which show trait associated expression.

2012-12-04 | GSE32112 | GEO

Gene expression data from liver sample of pig commercial herd Pix(DLxDE).

2011-10-31 | GSE25445 | GEO

Gene expression data from muscle sample of pig commercial herd Pix(DLxDE).

2012-12-04 | E-GEOD-32112 | biostudies-arrayexpress

Gene expression data from liver sample of pig commercial herd Pix(DLxDE).

2011-10-31 | E-GEOD-25445 | biostudies-arrayexpress

Gene expression data from Muscle Longissimus dorsi sample of F2 animals, T-test paired and SAM

Project description:To identify biological processes as well as molecular markers for drip loss, the transcriptomes of logissimus dorsi from 6 sib pair of F2 animals Keywords: T-test paired and SAM

2009-01-01 | GSE11193 | GEO

Sus scrofa

Project description:RNA-Seq analysis for drip loss in Pietrain × Duroc × Landrace × Yorkshire

| PRJNA295107 | ENA

Gene expression in Longissimus lumborum in pig using the GenmascqChip (custom 15K Agilent microarray)

Project description:Genetic variability of transcript abundance in pig skeletal muscle at slaughtering. The 325 pigs (females and barrows) used in gene expression analyses are part of a larger F2 population of 1,000 animals, setup within the framework of a QTL detection program. These animals were produced as a second generation intercross between two commercial sire lines (F016, Pietrain type line, and FH019, synthetic line from Hampshire, Duroc and Large-White founders, FRANCE-HYBRIDES, St Jean de Braye, France).

2012-04-04 | E-GEOD-28714 | biostudies-arrayexpress

Gene expression data of micro RNA from skeletal muscle sample of pig breed Duroc and Pietrain with malignant hyperthermia syndrome homozygous negative

Project description:Gene expression data of micro RNA from skeletal muscle sample of pig breed Duroc and Pietrain at adult stage.

2016-10-21 | GSE80198 | GEO