Unknown,Transcriptomics,Genomics,Proteomics

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Expression data of hepatocellular carcinoma and adjacent liver tissues


ABSTRACT: To identify therapeutic targets with high specificity to HCC, we searched for genes significantly up-regulated in HCC over corresponding non-tumor liver using high-density microarrays Keywords: disease state analysis HCC and surrounding non-tumor liver tissue samples were collected from 10 cases who underwent liver resection for HCC at National Cancer Center Hospital (Tokyo, Japan). One µg of total RNA was converted to end-labeled cRNA using the Whole Transcript Sense Target Labeling kit (Affymetrix, Santa Clara, CA). The fluorescent cRNA probes were hybridized to Human Exon 1.0 ST arrays (Affymetrix), as instructed by the supplier.

ORGANISM(S): Homo sapiens

SUBMITTER: satow reiko 

PROVIDER: E-GEOD-12941 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Combined functional genome survey of therapeutic targets for hepatocellular carcinoma.

Satow Reiko R   Shitashige Miki M   Kanai Yae Y   Takeshita Fumitaka F   Ojima Hidenori H   Jigami Takafumi T   Honda Kazufumi K   Kosuge Tomoo T   Ochiya Takahiro T   Hirohashi Setsuo S   Yamada Tesshi T  

Clinical cancer research : an official journal of the American Association for Cancer Research 20100413 9


<h4>Purpose</h4>The outcome of patients with advanced hepatocellular carcinoma (HCC) has remained unsatisfactory. Patients with HCC suffer from chronic hepatitis or liver cirrhosis, and their reserve liver function is often limited.<h4>Experimental design</h4>To develop new therapeutic agents that act specifically on HCC but interfere only minimally with residual liver function, we searched for genes that were upregulated in 20 cases of HCC [namely, discovery sets 1 (n = 10) and 2 (n = 10)] in c  ...[more]

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