Unknown,Transcriptomics,Genomics,Proteomics

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Expression analysis of trichostatin A-treated Aspergillus fumigatus Af293


ABSTRACT: Investigation of whole genome gene expression level changes in trichostatin A (TSA)-treated A. fumigatus Af293 compared to non-treated A. fumigatus Af293. Species: Aspergillus fumigatus; Strain: Af293; Type of array: Eukaryotic Expression (4plex, 2plex for a TSA-treated sample and 2plex for a non-treated sample); Technical replicates: Two per treatment.

ORGANISM(S): Aspergillus fumigatus Af293

SUBMITTER: Takayuki Motoyama 

PROVIDER: E-GEOD-19682 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Genome-wide maps of mononucleosomes and dinucleosomes containing hyperacetylated histones of Aspergillus fumigatus.

Nishida Hiromi H   Motoyama Takayuki T   Suzuki Yutaka Y   Yamamoto Shogo S   Aburatani Hiroyuki H   Osada Hiroyuki H  

PloS one 20100326 3


It is suggested that histone modifications and/or histone variants influence the nucleosomal DNA length. We sequenced both ends of mononucleosomal and dinucleosomal DNA fragments of the filamentous fungus Aspergillus fumigatus, after treatment with the histone deacetylase inhibitor trichostatin A (TSA). After mapping the DNA fragments to the genome, we identified >7 million mononucleosome positions and >7 million dinucleosome positions. We showed that the distributions of the lengths of the mono  ...[more]

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