Salinity stress inducible genes in rice
Ontology highlight
ABSTRACT:
ORGANISM(S): Oryza sativa
SUBMITTER: Hiroshi Mizuno
PROVIDER: E-GEOD-20746 | biostudies-arrayexpress |
REPOSITORIES: biostudies-arrayexpress
Publications
Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.).
Mizuno Hiroshi H Kawahara Yoshihiro Y Sakai Hiroaki H Kanamori Hiroyuki H Wakimoto Hironobu H Yamagata Harumi H Oono Youko Y Wu Jianzhong J Ikawa Hiroshi H Itoh Takeshi T Matsumoto Takashi T
BMC genomics 20101202
<h4>Background</h4>Microarray technology is limited to monitoring the expression of previously annotated genes that have corresponding probes on the array. Computationally annotated genes have not fully been validated, because ESTs and full-length cDNAs cannot cover entire transcribed regions. Here, mRNA-Seq (an Illumina cDNA sequencing application) was used to monitor whole mRNAs of salinity stress-treated rice tissues.<h4>Results</h4>Thirty-six-base-pair reads from whole mRNAs were mapped to t ...[more]
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