Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling of mouse fibroblasts to understand the effect of radiation on Oct-1 deficient and wild type mouse strains.


ABSTRACT: The POU-domain transcription factor Oct-1 is widely expressed in adult tissues and has been proposed to regulate a large group of target genes. Microarray expression profiling was used to evaluate gene expression changes in Oct-1-deficient mouse fibroblasts. A number of genes associated with cellular stress exhibited altered expression. Consistent with this finding, Oct-1-deficient fibroblasts were hypersensitive to radiation, doxorubicin, and hydrogen peroxide and harbored elevated reactive oxygen species. Expression profiling identified a second group of genes dysregulated in Oct-1-deficient fibroblasts following irradiation, including many associated with oxidative and metabolic stress. A number of these genes contain octamer sequences in their immediate 5' regulatory regions, some of which are conserved in human. These results indicate that Oct-1 modulates the activity of genes important for the cellular response to stress. overall experiment design: WT,WTR,MU and MUR replicates from Affymetrix GeneChip Mouse Expression Set 430 Arrays A and B

ORGANISM(S): Mus musculus

SUBMITTER: Sanchita Bhattacharya 

PROVIDER: E-GEOD-2084 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

The octamer binding transcription factor Oct-1 is a stress sensor.

Tantin Dean D   Schild-Poulter Caroline C   Wang Victoria V   Haché Robert J G RJ   Sharp Phillip A PA  

Cancer research 20051201 23


The POU-domain transcription factor Oct-1 is widely expressed in adult tissues and has been proposed to regulate a large group of target genes. Microarray expression profiling was used to evaluate gene expression changes in Oct-1-deficient mouse fibroblasts. A number of genes associated with cellular stress exhibited altered expression. Consistent with this finding, Oct-1-deficient fibroblasts were hypersensitive to gamma radiation, doxorubicin, and hydrogen peroxide and harbored elevated reacti  ...[more]

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