Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Absolute expression level of Debaryomyces hansenii genes

ABSTRACT: Total RNA versus genomic DNA hybridization on custom arrays designed for all Debaryomyces hansenii genes Total RNA was collected in mid-log phase from Debaryomyces hansenii cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridized competitively against Cy5 labeled genomic DNA from Debaryomyces hansenii.

ORGANISM(S): Debaryomyces hansenii

SUBMITTER: Alex Tsankov

PROVIDER: E-GEOD-22191 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Publications

The role of nucleosome positioning in the evolution of gene regulation.

Tsankov Alexander M AM Thompson Dawn Anne DA Socha Amanda A Regev Aviv A Rando Oliver J OJ

PLoS biology 20100706 7

Chromatin organization plays a major role in gene regulation and can affect the function and evolution of new transcriptional programs. However, it can be difficult to decipher the basis of changes in chromatin organization and their functional effect on gene expression. Here, we present a large-scale comparative genomic analysis of the relationship between chromatin organization and gene expression, by measuring mRNA abundance and nucleosome positions genome-wide in 12 Hemiascomycota yeast spec ...[more]

PMID: 20625544

Similar Datasets

Absolute expression level of Saccharomyces kluyveryii genes

Project description:Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces kluyveryii genes Total RNA was collected in mid-log phase from Saccharomyces kluyveryii cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridized competitively against Cy5 labeled genomic DNA from Saccharomyces kluyveryii.

2010-07-06 | E-GEOD-22202 | biostudies-arrayexpress

Absolute expression level of Kluyveromyces waltii genes

Project description:Total RNA versus genomic DNA hybridization on custom arrays designed for all Kluyveromyces waltii genes Total RNA was collected in mid-log phase from Kluyveromyces waltii cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridized competitively against Cy5 labeled genomic DNA from Kluyveromyces waltii.

2010-07-06 | E-GEOD-22199 | biostudies-arrayexpress

Absolute expression level of Saccharomyces mikatae genes

Project description:Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces mikatae genes Total RNA was collected in mid-log phase from Saccharomyces mikatae cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridized competitively against Cy5 labeled genomic DNA from Saccharomyces mikatae.

2010-07-06 | E-GEOD-22201 | biostudies-arrayexpress

Absolute expression level of Candida glabrata genes

Project description:Total RNA versus genomic DNA hybridization on custom arrays designed for all Candida glabrata genes Total RNA was collected in mid-log phase from Candida glabrata cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridized competitively against Cy5 labeled genomic DNA from Candida glabrata

2010-07-06 | E-GEOD-22194 | biostudies-arrayexpress

Absolute expression level of Saccharomyces bayanus genes

Project description:Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces bayanus genes Total RNA was collected in mid-log phase from Saccharomyces bayanus cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridized competitively against Cy5 labeled genomic DNA from Saccharomyces bayanus.

2010-07-06 | E-GEOD-22205 | biostudies-arrayexpress

Absolute expression level of Saccharomyces paradoxus genes

Project description:Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces paradoxus genes Total RNA was collected in mid-log phase from Saccharomyces paradoxus cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridized competitively against Cy5 labeled genomic DNA from Saccharomyces paradoxus.

2010-07-06 | E-GEOD-22193 | biostudies-arrayexpress

Absolute expression level of Yarrowia lipolytica genes

Project description:Total RNA versus genomic DNA hybridization on custom arrays designed for all Yarrowia lipolytica genes Total RNA was collected in mid-log phase from Yarrowia lipolytica cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridized competitively against Cy5 labeled genomic DNA from Yarrowia lipolytica.

2010-07-06 | E-GEOD-22192 | biostudies-arrayexpress

Absolute expression level of Candida albicans genes

Project description:Total RNA versus genomic DNA hybridization on custom arrays designed for all Candida albicans genes Total RNA was collected in mid-log phase from Candida albicans cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridized competitively against Cy5 labeled genomic DNA from Candida albicans

2010-07-06 | E-GEOD-22197 | biostudies-arrayexpress

Absolute expression level of Kluyveromyces lactis genes

Project description:Total RNA versus genomic DNA hybridization on custom arrays designed for all Kluyveromyces lactis genes Total RNA was collected in mid-log phase from Kluyveromyces lactis cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridized competitively against Cy5 labeled genomic DNA from Kluyveromyces lactis.

2010-07-06 | E-GEOD-22198 | biostudies-arrayexpress

Absolute expression level of Saccharomyces castellii genes

Project description:Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces castellii genes Total RNA was collected in mid-log phase from Saccharomyces castellii cells grown in rich medium (abbreviated CM, in house recipe). RNA was then converted to cDNA, Cy3-labeled and hybridized competitively against Cy5 labeled genomic DNA from Saccharomyces castellii.

2010-07-06 | E-GEOD-22200 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data