Unknown,Transcriptomics,Genomics,Proteomics

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RNAi profiling of human transcripts affected by RNAi to POLRMT


ABSTRACT: Rho0 HeLa cells (devoid of mitochondrial DNA and functional mitochondria) were infected with recombinant lentiviral vector pLSLG expressing short hairpin RNAi complementary to Exons 3 and 17 of POLRMT gene. 48 hours after infection total RNA was isolated and analyzed for inhibition of POLRMT transcripts by RT-PCR. Total RNA from Rho0 HeLa infected with empty pLSLG vector was used as control. The two samples of RNA were used for microarray hybridization with Affymetrix human genome U133 2.0 plus microarray in order to monitor changes in gene expression patterns after inhibition of POLRMT gene.

ORGANISM(S): Homo sapiens

SUBMITTER: Peter Chumakov 

PROVIDER: E-GEOD-2478 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Transcription of mammalian messenger RNAs by a nuclear RNA polymerase of mitochondrial origin.

Kravchenko Julia E JE   Rogozin Igor B IB   Koonin Eugene V EV   Chumakov Peter M PM  

Nature 20050801 7051


Transcription of eukaryotic genes is performed by three nuclear RNA polymerases, of which RNA polymerase II is thought to be solely responsible for the synthesis of messenger RNAs. Here we show that transcription of some mRNAs in humans and rodents is mediated by a previously unknown single-polypeptide nuclear RNA polymerase (spRNAP-IV). spRNAP-IV is expressed from an alternative transcript of the mitochondrial RNA polymerase gene (POLRMT). The spRNAP-IV lacks 262 amino-terminal amino acids of m  ...[more]

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