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Unknown,Transcriptomics,Genomics,Proteomics

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Rice endosperm: mRNA profiling and H3K27me3 occupancy

ABSTRACT: This SuperSeries is composed of the following subset Series: GSE26840: Express data from rice endosperm GSE27048: Genome-wide maps of chromatin state in rice endosperm Refer to individual Series

ORGANISM(S): Oryza sativa

SUBMITTER: Feng Tan

PROVIDER: E-GEOD-27064 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Comparison of four ChIP-Seq analytical algorithms using rice endosperm H3K27 trimethylation profiling data.

Malone Brandon M BM Tan Feng F Bridges Susan M SM Peng Zhaohua Z

PloS one 20110930 9

Chromatin immunoprecipitation coupled with high throughput DNA Sequencing (ChIP-Seq) has emerged as a powerful tool for genome wide profiling of the binding sites of proteins associated with DNA such as histones and transcription factors. However, no peak calling program has gained consensus acceptance by the scientific community as the preferred tool for ChIP-Seq data analysis. Analyzing the large data sets generated by ChIP-Seq studies remains highly challenging for most molecular biology labo ...[more]

PMID: 21984925

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Genome-wide maps of chromatin state in rice endosperm

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Expression data from rice embryo and endosperm development

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