Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

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Leaf_greenhouse


ABSTRACT: SuperSAGE was applied in the non-model organism banana (Musa acuminata) one leaf sample was analysed, no replicates were included

ORGANISM(S): Musa acuminata

SUBMITTER: Bert Coemans 

PROVIDER: E-GEOD-2811 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

SuperSAGE combined with PCR walking allows global gene expression profiling of banana (Musa acuminata), a non-model organism.

Coemans Bert B   Matsumura Hideo H   Terauchi Ryohei R   Remy Serge S   Swennen Rony R   Sági László L  

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 20051011 6


Super-serial analysis of gene expression (SuperSAGE) was used to characterize, for the first time, the global gene expression pattern in banana (Musa acuminata). A total of 10,196 tags were generated from leaf tissue, representing 5,292 expressed genes. Forty-nine tags of the top 100 most abundantly expressed transcripts were annotated by homology to cDNA or EST sequences. Typically for leaf tissue, analysis of the transcript profiles showed that the majority of the abundant transcripts are invo  ...[more]

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