Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Expression data from H2-producing Rhodobacter sphaeroides cultures fed different organic substrates


ABSTRACT: Rhodobacter sphaeroides produces hydrogen gas (H2) via its nitrogenase enzyme during photoheterotrophic growth under nitrogen-limited conditions. We find that cells produce different amounts of H2 and show different growth rates, depending on the organic substrate provided (lactate, succinate, glucose, xylose, or glycerol). We used global transcript analyses to determine what genes are involved in the onset of H2 production, and those that lead to different H2 production capacities in cells fed different organic substrates. Growth and real-time H2 production were followed for photoheterotrophically grown Rhodobacter sphaeroides cultures (19 mL test tube cultures) fed one of five different organic substrates (lactate, succinate, glucose, xylose, or glycerol) and provided glutamate as the sole nitrogen source. Cells were harvested for RNA extraction during early post-exponential growth, at points near the maximum H2 production rates of the cultures. Non-H2-producing cells (500 mL cultures) fed succinate and provided NH4+ as nitrogen source were also harvested for RNA extraction as reference samples. At least two samples for every given set of conditions were analyzed.

ORGANISM(S): Rhodobacter sphaeroides

SUBMITTER: Timothy Donohue 

PROVIDER: E-GEOD-29811 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides.

Kontur Wayne S WS   Ziegelhoffer Eva C EC   Spero Melanie A MA   Imam Saheed S   Noguera Daniel R DR   Donohue Timothy J TJ  

Applied and environmental microbiology 20110819 20


We used global transcript analyses and mutant studies to investigate the pathways that impact H(2) production in the photosynthetic bacterium Rhodobacter sphaeroides. We found that H(2) production capacity is related to the levels of expression of the nitrogenase and hydrogenase enzymes and the enzymes of the Calvin-Benson-Bassham pathway. ...[more]

Similar Datasets

2011-08-22 | GSE29811 | GEO
| PRJNA140925 | ENA
2016-07-12 | PXD002638 | Pride
2015-02-02 | E-GEOD-63448 | biostudies-arrayexpress
2014-12-15 | E-GEOD-58554 | biostudies-arrayexpress
2012-08-14 | E-GEOD-37381 | biostudies-arrayexpress
2011-10-25 | E-GEOD-33261 | biostudies-arrayexpress
2004-07-03 | GSE1515 | GEO
2012-08-02 | E-GEOD-39712 | biostudies-arrayexpress
2014-06-17 | E-GEOD-58553 | biostudies-arrayexpress