Ontology highlight
ABSTRACT:
ORGANISM(S): Homo sapiens
SUBMITTER: Joel Rozowsky
PROVIDER: E-GEOD-30399 | biostudies-arrayexpress |
REPOSITORIES: biostudies-arrayexpress
Rozowsky Joel J Abyzov Alexej A Wang Jing J Alves Pedro P Raha Debasish D Harmanci Arif A Leng Jing J Bjornson Robert R Kong Yong Y Kitabayashi Naoki N Bhardwaj Nitin N Rubin Mark M Snyder Michael M Gerstein Mark M
Molecular systems biology 20110802
To study allele-specific expression (ASE) and binding (ASB), that is, differences between the maternally and paternally derived alleles, we have developed a computational pipeline (AlleleSeq). Our pipeline initially constructs a diploid personal genome sequence (and corresponding personalized gene annotation) using genomic sequence variants (SNPs, indels, and structural variants), and then identifies allele-specific events with significant differences in the number of mapped reads between matern ...[more]