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Cross species differential gene expression

ABSTRACT: AB SOLID sequencing of ribosome-depleted RNA from S. Cerevisiae, S. Paradoxus, S. Mikatae, and S. Bayanus These four yeast species were grown in complete media and total RNA was sequenced. Cross-Species Gene Expression using RNA-Seq Data was examined. Eight samples examined: two biological replicates of each species

ORGANISM(S): Saccharomyces mikatae IFO 1815

SUBMITTER: Gabor Marth

PROVIDER: E-GEOD-32679 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Expression divergence measured by transcriptome sequencing of four yeast species.

Busby Michele A MA Gray Jesse M JM Costa Allen M AM Stewart Chip C Stromberg Michael P MP Barnett Derek D Chuang Jeffrey H JH Springer Michael M Marth Gabor T GT

BMC genomics 20111229

<h4>Background</h4>The evolution of gene expression is a challenging problem in evolutionary biology, for which accurate, well-calibrated measurements and methods are crucial.<h4>Results</h4>We quantified gene expression with whole-transcriptome sequencing in four diploid, prototrophic strains of Saccharomyces species grown under the same condition to investigate the evolution of gene expression. We found that variation in expression is gene-dependent with large variations in each gene's express ...[more]

PMID: 22206443

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