Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Hypothalamic gene expression profile indicates a reduction in G-protein signaling in the wfs1 mutant mice


ABSTRACT: WFS1 gene is coding protein with unknown function but its functional deficiency causes different neuropsychiatric and neuroendocrine syndromes. In the present study we aimed to find the functional networks influenced by the Wfs1 deficiency in the hypothalamus. We performed gene expression profiling (Mouse Gene 1.0 ST Arrays) in Wfs1 deficient mice (ko). Modified t-statistics was used for comparison of groups (wt vs ko). Functional annotation of the alterations in RNA levels was performed with Ingenuity Pathway Analysis. 305 genes were differentially expressed with nominal p-value less than 0.01. FDR adjusted p-values were significant (0.007) only for two genes M-bM-^@M-^S C4b (t=9.66) and Wfs1 (t=-9.03). However, several genes related to the G-protein signalling were very close to the FDR adjusted significance. For instance, Rgs4 (regulator of G-protein signalling 4) was down-regulated (-0.34, t=-5.4) in Wfs1 deficient mice. Changes in Rgs4 and C4B expression were confirmed by QRT-PCR. In humans, Rgs4 is in the locus for bipolar disease (BPD) and its expression is down-regulated in BPD. C4b is the gene related to the neurodegenerative diseases. In conclusion, hypothalamic gene expression profiling indicates alterations in some functionally relevant molecular pathways explaining the clinical syndrome in the Wolfram syndrome patients. 18 samples, two genotypes (wild type and mutant), in 129S6 genetic background

ORGANISM(S): Mus musculus

SUBMITTER: Sulev Koks 

PROVIDER: E-GEOD-33372 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

Hypothalamic gene expression profile indicates a reduction in G protein signaling in the Wfs1 mutant mice.

Kõks Sulev S   Soomets Ursel U   Plaas Mario M   Terasmaa Anton A   Noormets Klari K   Tillmann Vallo V   Vasar Eero E   Fernandes Cathy C   Schalkwyk Leonard C LC  

Physiological genomics 20111025 24


The Wfs1 gene codes for a protein with unknown function, but deficiency in this protein results in a range of neuropsychiatric and neuroendocrine syndromes. In the present study we aimed to find the functional networks influenced by Wfs1 in the hypothalamus. We performed gene expression profiling (Mouse Gene 1.0 ST Arrays) in Wfs1-deficient mice; 305 genes were differentially expressed with nominal P value<0.01. FDR (false discovery rate)-adjusted P values were significant (0.007) only for two g  ...[more]

Similar Datasets

2011-11-02 | GSE33372 | GEO
2017-12-01 | GSE102624 | GEO
2017-12-01 | GSE102623 | GEO
2015-02-14 | E-GEOD-65929 | biostudies-arrayexpress
2012-09-05 | E-GEOD-40585 | biostudies-arrayexpress
2015-02-14 | GSE65929 | GEO
2012-09-05 | GSE40585 | GEO
2010-03-09 | GSE15293 | GEO
2010-04-06 | E-GEOD-15293 | biostudies-arrayexpress
2024-01-30 | GSE235331 | GEO