Unknown,Transcriptomics,Genomics,Proteomics

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Global profiling of gene expression in the ΔdigR and ΔsgmT mutant of Myxococcus xanthus


ABSTRACT: In Myxococcus xanthus 55% of the more than 250 two-component signal transduction systems (TCS) genes are orphan. We hypothesized that the histidine kinase SgmT and the response regulator DigR, which comprises a DNA binding domain of the HTH_Xer type, function together to regulate gene expression. We performed genome-wide expression profiling experiments to determine wether the same set of genes are differentially expressed in the ΔdigR and ΔsgmT mutants. 3 biological replicates each; normalized ratios to vegetative cells of DK1622 (wt) Cy5

ORGANISM(S): Myxococcus xanthus

SUBMITTER: Anke Treuner-Lange 

PROVIDER: E-GEOD-34408 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

The orphan histidine protein kinase SgmT is a c-di-GMP receptor and regulates composition of the extracellular matrix together with the orphan DNA binding response regulator DigR in Myxococcus xanthus.

Petters Tobias T   Zhang Xin X   Nesper Jutta J   Treuner-Lange Anke A   Gomez-Santos Nuria N   Hoppert Michael M   Jenal Urs U   Søgaard-Andersen Lotte L  

Molecular microbiology 20120306 1


In Myxococcus xanthus the extracellular matrix is essential for type IV pili-dependent motility and starvation-induced fruiting body formation. Proteins of two-component systems including the orphan DNA binding response regulator DigR are essential in regulating the composition of the extracellular matrix. We identify the orphan hybrid histidine kinase SgmT as the partner kinase of DigR. In addition to kinase and receiver domains, SgmT consists of an N-terminal GAF domain and a C-terminal GGDEF  ...[more]

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