Unknown,Transcriptomics,Genomics,Proteomics

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Sequencing random oligonucleotides using standard GA II protocol


ABSTRACT: Study on sequencing biases introduced by library preparation step, namely by ligases. Comparison between standard Illumina protocol and improved High Definition (HD) protocol. Four replicates for N21 (21 random nucleotides), one replicate for N9 (9 random nucleotides), using either standard Illumina protocol or HD protocol

ORGANISM(S): synthetic construct

SUBMITTER: Helio Pais 

PROVIDER: E-GEOD-36540 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Reducing ligation bias of small RNAs in libraries for next generation sequencing.

Sorefan Karim K   Pais Helio H   Hall Adam E AE   Kozomara Ana A   Griffiths-Jones Sam S   Moulton Vincent V   Dalmay Tamas T  

Silence 20120530 1


<h4>Background</h4>The use of nucleic acid-modifying enzymes has driven the rapid advancement in molecular biology. Understanding their function is important for modifying or improving their activity. However, functional analysis usually relies upon low-throughput experiments. Here we present a method for functional analysis of nucleic acid-modifying enzymes using next generation sequencing.<h4>Findings</h4>We demonstrate that sequencing data of libraries generated by RNA ligases can reveal nove  ...[more]

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