Unknown,Transcriptomics,Genomics,Proteomics

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Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata


ABSTRACT: This SuperSeries is composed of the following subset Series: GSE24571: Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata [RNA-Seq] GSE38109: Natural variation in Arabidopsis thaliana transcriptomes Refer to individual Series

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Felix Ott 

PROVIDER: E-GEOD-38113 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata.

Hollister Jesse D JD   Smith Lisa M LM   Guo Ya-Long YL   Ott Felix F   Weigel Detlef D   Gaut Brandon S BS  

Proceedings of the National Academy of Sciences of the United States of America 20110120 6


Transposable elements (TEs) are often the primary determinant of genome size differences among eukaryotes. In plants, the proliferation of TEs is countered through epigenetic silencing mechanisms that prevent mobility. Recent studies using the model plant Arabidopsis thaliana have revealed that methylated TE insertions are often associated with reduced expression of nearby genes, and these insertions may be subject to purifying selection due to this effect. Less is known about the genome-wide pa  ...[more]

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