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Gene expression profile of inflorescence at early developmental stage

ABSTRACT: Gene expression profiling of infrorescence was performed to obtain overall signature of transcriptome at early developmental stages of inflorescence. After the reproductive stage transition, inflorescence samples corresponding to the early stages of development were collected based on the size. We obtained inflorescence samples ranging from 0.6 to 10 mm in two replicates representing 8 stages in inflorescence development. A total of 16 microarray data were obtained.

ORGANISM(S): Oryza sativa Japonica Group

SUBMITTER: Yutaka Sato

PROVIDER: E-GEOD-39426 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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RiceFREND: a platform for retrieving coexpressed gene networks in rice.

Sato Yutaka Y Namiki Nobukazu N Takehisa Hinako H Kamatsuki Kaori K Minami Hiroshi H Ikawa Hiroshi H Ohyanagi Hajime H Sugimoto Kazuhiko K Itoh Jun-Ichi J Antonio Baltazar A BA Nagamura Yoshiaki Y

Nucleic acids research 20121124 Database issue

Similarity of gene expression across a wide range of biological conditions can be efficiently used in characterization of gene function. We have constructed a rice gene coexpression database, RiceFREND (http://ricefrend.dna.affrc.go.jp/), to identify gene modules with similar expression profiles and provide a platform for more accurate prediction of gene functions. Coexpression analysis of 27 201 genes was performed against 815 microarray data derived from expression profiling of various organs ...[more]

PMID: 23180784

Publication: 1/2

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