Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

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COHCAP MIRA / 450k Comparison [450k]


ABSTRACT: Compare a single sample run with two different technologies: Illumina 450k methylation array and MIRA on NimbleGen This data is being published as a technical test of utility for a novel integrative genomic algorithm (COHCAP) Keywords: HES-2

ORGANISM(S): Homo sapiens

SUBMITTER: Charles Warden 

PROVIDER: E-GEOD-42707 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

COHCAP: an integrative genomic pipeline for single-nucleotide resolution DNA methylation analysis.

Warden Charles D CD   Lee Heehyoung H   Tompkins Joshua D JD   Li Xiaojin X   Wang Charles C   Riggs Arthur D AD   Yu Hua H   Jove Richard R   Yuan Yate-Ching YC  

Nucleic acids research 20130417 11


COHCAP (City of Hope CpG Island Analysis Pipeline) is an algorithm to analyze single-nucleotide resolution DNA methylation data produced by either an Illumina methylation array or targeted bisulfite sequencing. The goal of the COHCAP algorithm is to identify CpG islands that show a consistent pattern of methylation among CpG sites. COHCAP is currently the only DNA methylation package that provides integration with gene expression data to identify a subset of CpG islands that are most likely to r  ...[more]

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