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Differential expression analysis of HFF cells in S phase compared to cells in G2

ABSTRACT: This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Homo sapiens

SUBMITTER: Kristin Reiche

PROVIDER: E-GEOD-44633 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Expression analysis of HFF cells in G2 phase

Project description:Whole transcriptome expression analysis of HFF cells on Affymetrix Human Tiling 1.0 array set. Cells were synchronised by serum starvation and transcriptome-wide expression in G2 phase was assessed by using TileShuffle (Otto C, Reiche K, HackermÃ¼ller J. "Detection of differentially expressed segments in tiling array data". Bioinformatics. 2012 Jun 1;28(11):1471-9. Epub 2012 Apr 6.). We analyzed one Affymetrix Human Tiling 1.0R set

2014-02-04 | E-GEOD-44630 | biostudies-arrayexpress

Differential expression analysis of HFF cells in G0 phase compared to cells in G2

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

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Expression analysis of HFF cells in G1 phase

Project description:Whole transcriptome expression analysis of HFF cells on Affymetrix Human Tiling 1.0 array set. Cells were synchronised by serum starvation and transcriptome-wide expression in G1 phase was assessed by using TileShuffle (Otto C, Reiche K, HackermÃ¼ller J. "Detection of differentially expressed segments in tiling array data". Bioinformatics. 2012 Jun 1;28(11):1471-9. Epub 2012 Apr 6.). We analyzed one Affymetrix Human Tiling 1.0R set

2014-02-04 | E-GEOD-44628 | biostudies-arrayexpress

Expression analysis of HFF cells in S phase

Project description:Whole transcriptome expression analysis of HFF cells on Affymetrix Human Tiling 1.0 array set. Cells were synchronised by serum starvation and transcriptome-wide expression in S phase was assessed by using TileShuffle (Otto C, Reiche K, HackermÃ¼ller J. "Detection of differentially expressed segments in tiling array data". Bioinformatics. 2012 Jun 1;28(11):1471-9. Epub 2012 Apr 6.). We analyzed one Affymetrix Human Tiling 1.0R set

2014-02-04 | E-GEOD-44629 | biostudies-arrayexpress

Expression analysis of HFF cells in G0 phase

Project description:Whole transcriptome expression analysis of HFF cells on Affymetrix Human Tiling 1.0 array set. Cells were synchronised by serum starvation and transcriptome-wide expression in G0 phase was assessed by using TileShuffle (Otto C, Reiche K, HackermÃ¼ller J. "Detection of differentially expressed segments in tiling array data". Bioinformatics. 2012 Jun 1;28(11):1471-9. Epub 2012 Apr 6.). We analyzed one Affymetrix Human Tiling 1.0R set

2014-02-04 | E-GEOD-44627 | biostudies-arrayexpress

Differential expression analysis of HFF cells in G1 phase compared to cells in S

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2014-02-04 | E-GEOD-44632 | biostudies-arrayexpress

Differential expression analysis of HFF cells in G0 phase compared to cells in G1

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2014-02-04 | E-GEOD-44631 | biostudies-arrayexpress

Expression analysis of HFF cells in G0 phase [MAT]

Project description:Whole transcriptome expression analysis of HFF cells on Affymetrix Human Tiling 1.0 array set. Cells were synchronised by serum starvation and transcriptome-wide expression in G0 phase. Expression data were processed with MAT (Johnson et al., "Model-based analysis of tiling-arrays for ChIP-chip." Proc Natl Acad Sci USA, 103:12457-62, 2006.). We analyzed one Affymetrix Human Tiling 1.0R set

2012-12-18 | E-GEOD-36154 | biostudies-arrayexpress

Expression analysis of HFF cells in G1 phase [MAT]

Project description:Whole transcriptome expression analysis of HFF cells on Affymetrix Human Tiling 1.0 array set. Cells were synchronised by serum starvation and transcriptome-wide expression in G1 phase. Expression data were processed with MAT (Johnson et al., "Model-based analysis of tiling-arrays for ChIP-chip." Proc Natl Acad Sci USA, 103:12457-62, 2006.). We analyzed one Affymetrix Human Tiling 1.0R set

2012-12-18 | E-GEOD-36155 | biostudies-arrayexpress

Expression analysis of HFF cells in G1 phase [TileShuffle]

Project description:Whole transcriptome expression analysis of HFF cells on Affymetrix Human Tiling 1.0 array set. Cells were synchronised by serum starvation and transcriptome-wide expression in G1 phase. Expression data were processed with our new permutation approach TileShuffle. We analyzed one Affymetrix Human Tiling 1.0R set

2012-12-18 | E-GEOD-36163 | biostudies-arrayexpress

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