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Pseudopodoces humilis Transcriptome data used for gene annotation

ABSTRACT: To optimize the genome annotation, two tissue RNA libraries (i.e. liver and muscle) were constructed using the Illumina mRNA-Seq Prep Kit This study is a part of the Pseudopodoces humilis WGS project (BioProject ID: PRJNA179234) and was used for gene annotation improvement. We sequenced two tissues using illumina Hiseq 2000 platform.

ORGANISM(S): Pseudopodoces humilis

SUBMITTER: Shilin Tian

PROVIDER: E-GEOD-44779 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau.

Qu Yanhua Y Zhao Hongwei H Han Naijian N Zhou Guangyu G Song Gang G Gao Bin B Tian Shilin S Zhang Jinbo J Zhang Ruiying R Meng Xuehong X Zhang Yuan Y Zhang Yong Y Zhu Xiaojia X Wang Wenjuan W Lambert David D Ericson Per G P PG Subramanian Sankar S Yeung Carol C Zhu Hongmei H Jiang Zhi Z Li Ruiqiang R Lei Fumin F

Nature communications 20130101

The ground tit (Parus humilis) is endemic to the Tibetan plateau. It is a member of family Paridae but it was long thought to be related to the ground jays because of their morphological similarities. Here we present the ground tit's genome and re-sequence two tits and one ground jay, to clarify this controversially taxonomic status and uncover its genetic adaptations to the Tibetan plateau. Our results show that ground tit groups with two tits and it diverges from them between 7.7 and 9.9 Mya. ...[more]

PMID: 23817352

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