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Somatic point mutation calling in low cellularity tumors

ABSTRACT: Illumina 1M Omni Quad arrays were used to test mutation calling accuracy of qSNP tool (a mutation caller) Ilumina array genotypes with GenCal (GC score)>0.70 were used in the comparison of genotype calls using next generation sequencing data and qSNP (mutation caller) 2 samples (control cell line and Melanoma cell line). This is the data for a validation step. contributor: Australian Pancreatic Cancer Genome Initiative

ORGANISM(S): Homo sapiens

SUBMITTER: Darrin Taylor

PROVIDER: E-GEOD-47904 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Somatic point mutation calling in low cellularity tumors

Project description:Illumina 1M Omni Quad arrays were used to test mutation calling accuracy of qSNP tool (a mutation caller) Ilumina array genotypes with GenCal (GC score)>0.70 were used in the comparison of genotype calls using next generation sequencing data and qSNP (mutation caller)

2014-06-13 | GSE47904 | GEO

RNA-Sequencing Identifies Novel Imprinted Genes in Human Placenta (SNP genotyping)

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