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Unknown,Transcriptomics,Genomics,Proteomics

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Transcriptome profiling of Arabidopsis using strand-specific RNA-seq

ABSTRACT: We applied single-end strand-specific RNA-seq experiments to compare the abundance of natural antisense transcripts in Arabidopsis. Examination of 3 wild type (WT) organs, including leaves, inflorescences and siliques.

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Huan Wang

PROVIDER: E-GEOD-49950 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis.

Wang Huan H Chung Pil Joong PJ Liu Jun J Jang In-Cheol IC Kean Michelle J MJ Xu Jun J Chua Nam-Hai NH

Genome research 20140108 3

Recent research on long noncoding RNAs (lncRNAs) has expanded our understanding of gene transcription regulation and the generation of cellular complexity. Depending on their genomic origins, lncRNAs can be transcribed from intergenic or intragenic regions or from introns of protein-coding genes. We have recently reported more than 6000 intergenic lncRNAs in Arabidopsis. Here, we systematically identified long noncoding natural antisense transcripts (lncNATs), defined as lncRNAs transcribed from ...[more]

PMID: 24402519

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