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MiRNAs trigger widespread epigenetically-activated siRNAs from transposons inÂ Arabidopsis [PARE-seq]

ABSTRACT: Utilizing whole-genome Parallele Analysis of RNA Ends (PARE)-seq to analyze the degradome to assess miRNA-binding of transposons in DNA methylation mutants, and RNAi mutants, compared to wildtype. Genome-wide small RNA profiling was done by Illumina TruSeq sample preparation followed by high-throughput sequencing with Illumina HiSeq 2000 platform.Â

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Kate Creasey

PROVIDER: E-GEOD-52342 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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miRNAs trigger widespread epigenetically-activated siRNAs from transposons in Arabidopsis

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