Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

ShRNA kinome screen identifies TBK1 as therapeutic target for HER2+ breast cancer


ABSTRACT: Microarray analysis was performed at the UHN Microarray Centre (UHNMAC, Ontario, Canada) using Illumina HumanHT-12 v4 BeadChip with 500 ng of total RNA prepared by RNeasy mini kit (QIAGEN, Cat. No. 74104). Samples from HCC1954 cells with 3-day treatment of TBK1-II at 4 uM were used to compare with vehicle-treated controls. Microarray data was processed and normalized by lumi package from BioConductor in R with Quantile Method. Difference between the samples were calculated by Bayesian statistic using limma package from BioConductor in R to obtain Moderated T value for subsequent Pathway analysis. Total RNA extracted from HER2+ HCC1954 cells after 3 days treatment of TBK1-II inhibitor compared with vehicle control

ORGANISM(S): Homo sapiens

SUBMITTER: Jeff Liu 

PROVIDER: E-GEOD-53658 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Similar Datasets

2012-12-28 | E-GEOD-39599 | biostudies-arrayexpress
2013-12-26 | GSE53658 | GEO
2014-12-03 | E-MTAB-3098 | biostudies-arrayexpress
2010-06-11 | E-GEOD-6639 | biostudies-arrayexpress
2010-12-10 | E-GEOD-17386 | biostudies-arrayexpress
2011-01-15 | E-GEOD-20543 | biostudies-arrayexpress
2013-10-22 | E-GEOD-51501 | biostudies-arrayexpress
2013-10-22 | E-GEOD-51504 | biostudies-arrayexpress
2010-06-25 | E-GEOD-16458 | biostudies-arrayexpress
2013-10-22 | E-GEOD-51508 | biostudies-arrayexpress