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Genome-wide analysis of histone modifications in latently HIV-1 infected T cells

ABSTRACT: The epigenetic mechanisms established by histone modifications may affect the transcriptional silencing of HIV-1 and viral latency. A systematic epigenome profiling could be applicable to develop new epigenetic diagnostic markers for detecting HIV-1 latency. In this study, histone modification profiles of HIV-1 latency cell lines were compared with those of uninfected CD4+ T cell line. The HIV-1 latency gave rise to differential histone modification regions. The differential enrichment patterns helped us to define potential effector genes leading to the viral latency. The histone H3K4me3 and H3K9ac profiles were obtained from the HIV-1 latency cell lines (NCHA1, NCHA2, and ACH2) and control CD4+ T cell line (A3.01)

ORGANISM(S): Homo sapiens

SUBMITTER: Tae-Young Roh

PROVIDER: E-GEOD-58247 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Genome-wide analysis of histone modifications in latently HIV-1 infected T cells.

Park Jihwan J Lim Chae Hyun CH Ham Seokjin S Kim Sung Soon SS Choi Byeong-Sun BS Roh Tae-Young TY

AIDS (London, England) 20140701 12

<h4>Objectives</h4>The transcriptional silencing of HIV type 1 (HIV-1) provirus in latently infected cells is a major hurdle on the pathway to HIV-1 elimination. The epigenetic mechanisms established by histone modifications may affect the transcriptional silencing of HIV-1 and viral latency. A systematic epigenome profiling could be applicable to develop new epigenetic diagnostic markers for detecting HIV-1 latency.<h4>Design</h4>The HIV-1 latency cell lines (NCHA1, NCHA2 and ACH2] were compare ...[more]

PMID: 24762674

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