Unknown,Transcriptomics,Genomics,Proteomics

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Reference Design time-course


ABSTRACT: E.coli K-12 W3110 was grown in LB medium and harvested at each time point. And time series microarray experiments were performed based on reference desgin. In reference design, the control sample is collected at one representative time point. Combining with data from sequential design, more acculate and reliable expression series could be collected. Keywords: Reference design The control sample is collected at one representative time point.

ORGANISM(S): Escherichia coli

SUBMITTER: Naotake Ogasawara 

PROVIDER: E-GEOD-6033 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Dynamics of time-lagged gene-to-metabolite networks of Escherichia coli elucidated by integrative omics approach.

Takahashi Hiroki H   Morioka Ryoko R   Ito Ryosuke R   Oshima Taku T   Altaf-Ul-Amin Md M   Ogasawara Naotake N   Kanaya Shigehiko S  

Omics : a journal of integrative biology 20100923 1-2


In the postgenomics era, integrative analysis of several "omics" data is absolutely required for understanding the cell as a system. Integrative analysis of transcriptomics and metabolomics can lead to elucidation of gene-to-metabolite networks. When integrating different time series "omics" data, it is necessary to take into consideration a time lag between those data. In the present study, we conducted an integrative analysis of time series transcriptomics and metabolomics data of Escherichia  ...[more]

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