Unknown,Transcriptomics,Genomics,Proteomics

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BATSeq of ESC-FCS/ESC-2i/NSC


ABSTRACT: Single-cell polyadenylation site quantification 48 single cells each of murine embryonic stem cells maintained in FCS+LIF medium ("ESC"), embryonic stem cells maintained in serum free, 2i containing medium ("2i") and neural stem cells ("NSC") were sequenced by BATSeq, a single cell transcriptomic protocol for mapping polyadenylation sites in single cells.

ORGANISM(S): Mus musculus

SUBMITTER: Lars Velten 

PROVIDER: E-GEOD-60768 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Single-cell polyadenylation site mapping reveals 3' isoform choice variability.

Velten Lars L   Anders Simon S   Pekowska Aleksandra A   Järvelin Aino I AI   Huber Wolfgang W   Pelechano Vicent V   Steinmetz Lars M LM  

Molecular systems biology 20150603 6


Cell-to-cell variability in gene expression is important for many processes in biology, including embryonic development and stem cell homeostasis. While heterogeneity of gene expression levels has been extensively studied, less attention has been paid to mRNA polyadenylation isoform choice. 3' untranslated regions regulate mRNA fate, and their choice is tightly controlled during development, but how 3' isoform usage varies within genetically and developmentally homogeneous cell populations has n  ...[more]

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