Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Transcription profiling of mouse embryoic fibroblasts expressing wild type MyoD or its non-acetylatable version MyoD RRR to investigate how MyoD acetylation may contribute to differential gene activation.


ABSTRACT: The transcription factor MyoD can coax na?e fibroblasts or otherwise committed cells to adopt the skeletal muscle phenotype by activating the muscle gene expression program. Activation of muscle gene expression occurs in quantal steps with not all the target genes of MyoD being activated at the same time. Some genes are induced in the initial phases, others at later stages despite the fact that MyoD is present throughout the differentiation process. MyoD is post-translationally modified by phosphorylation, ubiquitination, and acetylation. Here, we have employed a model system in which MyoD and its non-acetylatable version were inducibly expressed in mouse embryonic fibroblasts derived from mice to investigate how MyoD acetylation may contribute to differential gene activation. Experiment Overall Design: Mouse embryos fibroblasts (MEFs) obtained from MyoD-/-/Myf5-/- animals will be transduced with retroviruses expressing an estrogen receptor hormone binding domain fused to either mouse MyoD wild type (ER-MyoD wt) or MyoD bearing three point mutations at lysine residues 99, 102, and 104 that render it no longer acetylatable ( ER-MyoD RRR). A retrovirus without the ER-MyoD insert was also employed as negative control.

Aim 2. We will compare genome-wide expression profiling of MEFs transduced with either ER-MyoD wt or ER-MyoD RRR cultured in the presence of a medium that promotes skeletal muscle differentiation (DM) supplemented with beta-estradiol for 0, 6, 12, and 24 hours, respectively.

ORGANISM(S): Mus musculus

SUBMITTER: Eric Hoffman 

PROVIDER: E-GEOD-6487 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

altmetric image

Publications

MyoD acetylation influences temporal patterns of skeletal muscle gene expression.

Di Padova Monica M   Caretti Giuseppina G   Zhao Po P   Hoffman Eric P EP   Sartorelli Vittorio V  

The Journal of biological chemistry 20071027 52


MyoD is sufficient to initiate the skeletal muscle gene expression program. Transcription of certain MyoD target genes occurs in the early phases, whereas that of others is induced only at later stages, although MyoD is present throughout the differentiation process. MyoD acetylation regulates transcriptional competency, yet whether this post-translational modification is equally relevant for activation of all the MyoD targets is unknown. Moreover, the molecular mechanisms through which acetylat  ...[more]

Similar Datasets

2006-12-13 | GSE6487 | GEO
2016-03-01 | E-GEOD-75370 | biostudies-arrayexpress
2016-03-01 | E-GEOD-75631 | biostudies-arrayexpress
2016-03-01 | GSE75631 | GEO
2016-03-01 | GSE75370 | GEO
2005-09-07 | GSE3244 | GEO
2012-12-31 | E-GEOD-39379 | biostudies-arrayexpress
2005-07-28 | GSE3014 | GEO
2008-06-12 | E-GEOD-3244 | biostudies-arrayexpress
2017-11-12 | GSE103603 | GEO