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Identification of early response genes to Pratylenchus coffeae in resistant ramie by digital gene expression analysis


ABSTRACT: Digital gene expression (DGE) analysis was performed to study differentially expressed genes (DEGs) between CK and P. coffeae challenged (CH) roots of ramie. A total of 10.16 and 8.07 million clean reads were detected in the CK and CH libraries, respectively. A total of 137 genes were identified as DEGs, 117 and 20 of them were up- and down- regulated respectively, in response to P. coffeae infection. Roots samples of Pratylenchus coffeae infected(E2) and un-infected (E1) ramie were RNA-Seq sequenced to compare differented expressed genes.

ORGANISM(S): Boehmeria nivea

SUBMITTER: Yongting Yu 

PROVIDER: E-GEOD-64974 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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