Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv.oryzae constitutively expressing the X. oryzae pv. oryzicola TAL2a effector from the high copy vector pKEB31

ABSTRACT: We performed RNA-Seq of leaves of Oryza sativa L. ssp. japonica cv. Nipponbare 48 hours after inoculation with  Xanthomonas oryzae pv. oryzae strain PXO99A heterologously expressing the Tal2a effector, the designer TAL effector dT280 which targets a sequence overlapping the predicted Tal2a binding sequence in UCH, or the Tal11b effector. Results provide insight into the genes differentially regulated in a Tal2a- and dT280-specific manner. Examination of mRNA levels in Oryza sativa L. ssp. japonica cv. Nipponbare leaves at 48 hours after inoculation. Each leaf was considered a separate biological replicate.

ORGANISM(S): Oryza sativa Japonica Group

SUBMITTER: Adam Bogdanove 

PROVIDER: E-GEOD-67958 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Json Xml
altmetric image

Publications

A transcription activator-like effector from Xanthomonas oryzae pv. oryzicola elicits dose-dependent resistance in rice.

Hummel Aaron W AW   Wilkins Katherine E KE   Wang Li L   Cernadas R Andres RA   Bogdanove Adam J AJ  

Molecular plant pathology 20160421 1

Xanthomonas spp. reduce crop yields and quality worldwide. During infection of their plant hosts, many strains secrete transcription activator-like (TAL) effectors, which enter the host cell nucleus and activate specific corresponding host genes at effector binding elements (EBEs) in the promoter. TAL effectors may contribute to disease by activating the expression of susceptibility genes or trigger resistance associated with the hypersensitive reaction (HR) by activating an executor resistance  ...[more]

Similar Datasets

Transcriptomics Host transcriptional reprogramming across diverse strains of the rice bacterial leaf streak pathogen Xanthomonas oryzae pv.oryzicola
2015-05-01 | E-GEOD-67588 | biostudies-arrayexpress
Transcriptomics Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv.oryzae constitutively expressing the X. oryzae pv. oryzicola TAL2a effector from the high copy vector pKEB31
2015-05-01 | GSE67958 | GEO
Transcriptomics Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv. oryzae strain BLS354
2016-07-07 | E-GEOD-75131 | biostudies-arrayexpress
Transcriptomics Host transcriptional reprogramming in response to the rice bacterial blight pathogen Xanthomonas oryzae pv. oryzae strain BLS354
2016-07-07 | GSE75131 | GEO
Transcriptomics Host transcriptional reprogramming across diverse strains of the rice bacterial leaf streak pathogen Xanthomonas oryzae pv.oryzicola
2015-05-01 | GSE67588 | GEO
Transcriptomics Rice roots: Non-colonized (sterile) control vs. infected with Xanthomonas oryzae pv. oryzae strain PXO99 (Xan)
2019-09-01 | GSE136706 | GEO
Transcriptomics The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice
2023-05-31 | GSE227706 | GEO
Transcriptomics Transcriptomes of transgenic rice expressing a constitutively active phytochrome OsPHYB-Y283H (OsYHB) allele
2013-07-01 | GSE36320 | GEO
Transcriptomics Expression data from infected (Xanthomonas oryzae pv. Oryzae (P10)) leaf in japonica rice (cv. Y73)
2012-02-27 | GSE36093 | GEO
Proteomics A phosphoproteomic landscape of rice (Oryza sativa L.) tissues
2018-04-11 | PXD005241 | Pride