Unknown,Transcriptomics,Genomics,Proteomics

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RNA-seq of postnatal day 0 (P0) wild-type and Satb2-/- cortices


ABSTRACT: The goal of the study was to compare gene expression of P0 wild-type and P0 Satb2-/- cortices. Total RNAs were isolated from P0 cortices dissected from wild-type and Satb2-/- mice (n=3 for each genotype), following Qiagen RNAeasy kit instruction.Sequence libraries were made following Illumina RNA TruSeq library preparation guide.The libaries were pair-end sequenced (50nt per end). Differentially expressed genes were identified by DESEQ. Total RNAs were isolated from P0 cortices (3 control and 3 mutants), and sequenced on Illumina Genome Analyzer

ORGANISM(S): Mus musculus

SUBMITTER: Bin Chen 

PROVIDER: E-GEOD-68911 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Mutual regulation between Satb2 and Fezf2 promotes subcerebral projection neuron identity in the developing cerebral cortex.

McKenna William L WL   Ortiz-Londono Christian F CF   Mathew Thomas K TK   Hoang Kendy K   Katzman Sol S   Chen Bin B  

Proceedings of the National Academy of Sciences of the United States of America 20150831 37


Generation of distinct cortical projection neuron subtypes during development relies in part on repression of alternative neuron identities. It was reported that the special AT-rich sequence-binding protein 2 (Satb2) is required for proper development of callosal neuron identity and represses expression of genes that are essential for subcerebral axon development. Surprisingly, Satb2 has recently been shown to be necessary for subcerebral axon development. Here, we unravel a previously unidentif  ...[more]

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