Unknown,Transcriptomics,Genomics,Proteomics

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Cryptococcus neoformans gene expression in minimal media of wild type (WT) and ALL2 mutant (all2Î) cells

ABSTRACT: To examine the comparative transcription profile of WT and all2Î mutant cells in in vitro conditions to determine genes responsible for hypervirulent phenotype of all2Î cells. Using transcriptional profiling, we determined that many genes involved in transport were differentially transcribed between the wild type and the mutant strain. With the help of further experiments we could rule out that ALL2 has a unique function in maintaining the intracellular pH under acidic conditions. For arrays, total RNA was isolated from WT and all2Î mutant using Qiagen RNeasy Kit. For RNA extraction, WT and all2Î mutant were grown in minimal media. Cells were grown for overnight, diluted 1:100 and then again grown overnight or up to an OD of 0.6-0.7 with agitation (150rpm) at 37Â°C.

ORGANISM(S): Cryptococcus neoformans

SUBMITTER: Jinsheng Yu

PROVIDER: E-GEOD-74217 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Cryptococcus neoformans gene expression in minimal media of wild type (WT) and ALL2 mutant (all2Î) cells

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OmicsDI is part of the ELIXIR infrastructure

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Dataset Information

Cryptococcus neoformans gene expression in minimal media of wild type (WT) and ALL2 mutant (all2Î) cells

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OmicsDI is part of the ELIXIR infrastructure

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Cryptococcus neoformans gene expression in minimal media of wild type (WT) and ALL2 mutant (all2Î) cells