Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling of zebrafish germ layer morphogenesis


ABSTRACT: In gastrulation, distinct progenitor cell populations are induced and sorted into the three germ layers ectoderm, mesoderm and endoderm. In order to identify genes involved in germ layer specification and morphogenesis, we identified genes differentially expressed between ectodermal and mesendodermal progenitor cells. To do so, we first generated highly enriched pools of ectodermal and mesendodermal progenitor cells. Mesendodermal cells were generated by over-expressing the Nodal signal Cyclops in wild type embryos and ectodermal cells were taken from mz-one-eyed-pinhead (oep) mutant embryos. We then compared the transcriptome of ectodermal versus mesendodermal cells taken from embryos at 7 hours post fertilization (hpf). In wild type embryos at this stage (70% epiboly), the first ectodermal and mesendodermal progenitor cells have already been sorted into their respective germ layers and ingression of mesendodermal progenitors is still ongoing.

ORGANISM(S): Danio rerio

SUBMITTER: Carl-Philipp Heisenberg 

PROVIDER: E-MEXP-171 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Identification of regulators of germ layer morphogenesis using proteomics in zebrafish.

Link Vinzenz V   Carvalho Lara L   Castanon Irinka I   Stockinger Petra P   Shevchenko Andrej A   Heisenberg Carl-Philipp CP  

Journal of cell science 20060425 Pt 10


During vertebrate gastrulation, a well-orchestrated series of morphogenetic changes leads to the formation of the three germ layers: the ectoderm, mesoderm and endoderm. The analysis of gene expression patterns during gastrulation has been central to the identification of genes involved in germ layer formation. However, many proteins are regulated on a translational or post-translational level and are thus undetectable by gene expression analysis. Therefore, we developed a 2D-gel-based comparati  ...[more]

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