Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

43 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

CRK36 RNAi ABA treatment

ABSTRACT: Genome-wide expression studies by an Arabidopsis 3 Oligo Microarray (Agilent Technologies, Switzerland) were performed using wild-type and CRK36 RNAi transgenic plants growing on plate containing ABA. We collected young seedlings growing on the plate containing 0.5 ?M ABA for 10 days.

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Kyonoshin Maruyama

PROVIDER: E-MEXP-3354 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of Arabidopsis areb1 areb2 abf3 treated with ABA 6h

Project description:Total RNA was isolated with RNAiso regent (Takara) from 12-day-old seedlings of the areb1 areb2 abf3 triple mutant and WT plants grown on GM agar plates with or without 50 µM ABA for 6 h.

2009-12-17 | E-MEXP-2187 | biostudies-arrayexpress

Transcription profiling of Arabidopsis wild type and srk2dei triple mutant plants in response to abscisic acid, salt and dehydration treatments

Project description:Expression profiles of the wild-type Arabidopsis (Col) and srk2dei triple mutant plants in response to ABA, NaCl, and dehydration treatments.<br><br>

2009-12-17 | E-MEXP-2116 | biostudies-arrayexpress

Transcriptional profiling of DEX-inducible SNRK3.15 seedlings in the presence of ABA

Project description:Transcriptional profiling of a DEX-inducible SNRK3.15 seedlings in the presence of ABA.

2012-03-01 | E-MEXP-3397 | biostudies-arrayexpress

Transcriptional profiling by array of Arabidopsis ABA auxotroph to identify early downstream targets of transcription in response to a small dose of abscisic acid (ABA)

Project description:Abscisic acid (ABA) is a plant hormone that is important in responding to various environmental stresses. Using an ABA auxotroph in Arabidopsis (aba2-2) as the plant material, we would like to identify early downstream targets of transcription in response to a small dose of ABA, 1 uM. We also added cycloheximide to preferentially obtain immediate targets of ABA addition. We believe that using a sensitized background of an ABA auxotroph would yield a set of genes that are very closely regulated by ABA at the transcriptional level. This data set will be used for network analysis of ABA signaling.

2011-10-30 | E-MEXP-3404 | biostudies-arrayexpress

Genome-wide analysis of genes regulated by ARR22 overexpression.

Project description:The experiment was designed to enable comparison of Pro35S:ARR22:HA in the presence of DEX or absence of DEX.

2013-07-27 | E-MEXP-3685 | biostudies-arrayexpress

Transcription profiling of Arabidopsis srk2cf mutant plants under abscisic acid (ABA) treatment for 0, 1 and 4 hours

Project description:Microarray experiments were performed using Arabidopsis wild type plants (Col-0) and srk2cf double knockout mutants to investigate functions of two osmotic stress-activated protein kinases, SRK2C and SRK2F. Transcription profiles of wild type and mutants were compared under abscisic acid (ABA) treatment for 0, 1 and 4 h.

2009-10-15 | E-MEXP-2378 | biostudies-arrayexpress

Gm_cold1day_dry4days

Project description:G. max plants was grown in plastic pots filled with soil for 3 weeks under a 12 h light/12 h dark at 28°C. Cold treatment: The 3-week-old plants were transferred from 28°C to 4°C and were grown for 1 day. Dehydration treatment: The 3-week-old plants were grown for 4 days without watering.

2012-03-30 | E-MEXP-3164 | biostudies-arrayexpress

Transcription profiling of developing wild type pea seeds and those expressing anti-ABA antibodies

Project description:ABA regulates in plants a wide range of developmental events, mediates responses to environmental stress and is necessary to proceed through seed maturation and to acquire desiccation tolerance and dormancy. Immuno-modulation is a suitable means to study ABA functions during seed maturation. Anti-ABA single chain antibody was expressed in pea seed driving LeB4-promoter (Saalbach et al., High-level expression of a single chain Fv fragment (scFv) antibody in transgenic pea seeds J. Plant Physiol. 2001 158: 529-533), which produced only a weak phenotype with slightly decreased seed weight, globulin/albumin and total nitrogen content (aABA line 16 cultivar Erbi). In another approach with a stronger, improved USP-promoter used to express the anti-ABA antibody in pea seeds a different phenotype emerged (aABA line 7, cultivar Eifel). In this line individual seed weight increased by 20 to 30% together with higher globulin and albumin content. To dissect the aABA phenotype at the molecular level, a search for genes with differential expression patterns in transgenic plant versus wild type seeds has been performed using 6k-oligo microarray analysis. cDNA probes were prepared from RNA isolated from embryo of developing seeds of wild type (12, 18, and 22 DAP) and transgenic aABA plants (12, 18, and 22 DAP), which correspond to the transition phase of seed development, and 6k-oligo microarray.

2008-07-31 | E-MEXP-1555 | biostudies-arrayexpress

OsPIF1_OX_Node

Project description:Total RNA was isolated with RNAiso regent (Takara) from node portions at a heading stage of transgenic rice (Oryza sativa L. cv. Nipponbare) plants overexpressing OsPIF1 and vector control plants grown in green house at 28 C (day) and 25 C (night) under natural light conditions supplemented with metal halide lamps to provide 14-h daylength.

2012-09-28 | E-MEXP-3605 | biostudies-arrayexpress

amiRNA GRF7

Project description:We compared the expression profiles of amiG7 mutant with those of the wild type plants using an Agilent Arabidopsis 3 Oligo Microarray.

2013-06-21 | E-MEXP-3269 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data