Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling of mouse liver cells with a conditionally active liver clock to descriminate between rhythmic gene expression driven by cyclic systemic cues and local oscillators


ABSTRACT: The mammalian circadian timing system consists of a master pacemaker in the suprachiasmatic nucleus (SCN) that synchronizes self-sustained oscillators in most peripheral cells. Rhythmic gene expression in peripheral tissues can be driven by cyclic systemic cues emanating from the SCN or by local oscillators. To discriminate between these two mechanisms, we engineered a mouse strain with a conditionally active liver clock. Transcriptome profiling revealed that the circadian transcription of most genes depends on functional hepatocyte clocks. However, the expression of 31 genes, including mPer2, oscillates robustly in clock-arrested hepatocytes. Such genes may be implicated in the synchronization of liver oscillators

ORGANISM(S): Mus musculus

SUBMITTER: Benoît Kornmann 

PROVIDER: E-MEXP-842 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Evidence for an overlapping role of CLOCK and NPAS2 transcription factors in liver circadian oscillators.

Bertolucci Cristiano C   Cavallari Nicola N   Colognesi Ilaria I   Aguzzi Jacopo J   Chen Zheng Z   Caruso Pierpaolo P   Foá Augusto A   Tosini Gianluca G   Bernardi Francesco F   Pinotti Mirko M  

Molecular and cellular biology 20080303 9


The mechanisms underlying the circadian control of gene expression in peripheral tissues and influencing many biological pathways are poorly defined. Factor VII (FVII), the protease triggering blood coagulation, represents a valuable model to address this issue in liver since its plasma levels oscillate in a circadian manner and its promoter contains E-boxes, which are putative DNA-binding sites for CLOCK-BMAL1 and NPAS2-BMAL1 heterodimers and hallmarks of circadian regulation. The peaks of FVII  ...[more]

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