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RNA-Seq of infected Tomato roots by the vascular wilt fungus Fusarium oxysporum

ABSTRACT: The biological relevance of the experiment was to mainly understand the F. oxysporum genes that are involved in the colonization of tomato roots during early interaction timepoints of 1, 2, 3 and 7 days post infection as compared to the in vitro grown axenic sample.

INSTRUMENT(S): Illumina NovaSeq 6000

ORGANISM(S): Fusarium oxysporum

SUBMITTER: Amey Redkar

PROVIDER: E-MTAB-10597 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Tomato xylem proteome composition following infection by Fusarium oxysporum

Project description:The influence of during colonization by Fusarium oxysporum f. sp. Lycopersici secreted effector proteins on the proteome of the xylem sap of tomato plants was investigated using a label-free quantitative proteomics approach. A comparison was made between plants inoculated with either a mock control, a non-effector knockout control, Fusarium oxysporum Fol007 wildtype and four Fol007 single effector protein knockout strains. Specific effects on the relative abundance of certain proteins of the xylem sap occurred for the different knockout strains next to a core set of 24 differentially accumulated proteins which may provide insights into the mechanisms of promoting infection for each of the tested effector proteins.

2015-10-26 | PXD003010 | Pride

Genome-wide transcriptional Responses to Fusarium oxysporum and Tomato mosaic virus in Tomato

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The tomato wilt fungus Fusarium oxysporum f. sp. lycopersici shares common ancestors with nonpathogenic F. oxysporum isolated from wild tomatoes in the Peruvian Andes.

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Comparative O-glycoproteomics of Fusarium oxysporum

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RNA-Seq of infected Tomato roots by the vascular wilt fungus Fusarium oxysporum

Project description:RNA-Seq of infected Tomato roots by the vascular wilt fungus Fusarium oxysporum

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Biostimulant and antagonistic potential of endophytic fungi against fusarium wilt pathogen of tomato Fusarium oxysporum f. sp. lycopersici.

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