The transcriptomics of SLC18A3 positive cells from arcuate nucleus of rats in different pubertal development stages.
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ABSTRACT: Based on our spatial transcriptomics sequencing data, we observed solute carrier family 18 member A3 (SLC18A3) was specificially expressed in kisspeptin-expressed neurons in arcuate nucleus (ARC). SLC18A3 as a surface marker was used to examine the isolation of living kisspeptin-expressed neurons by flow cytometric (FACS) assay. Fresh isolated ARC nucleus tissues from female Sprague-Dawley rats in postnatal day (PND)-25, 35 and 45 (n=10 each group) were harvested, and processed single-cell suspension for FACS assay by SLC18A3. Here, we obtained two populations according to the cell size by FSC/SSC signals, and further harvested a small proportion of Slc18a3+ cells from hypothalamus of PND-25, 35 and 45. Smart-seq was conducted to detect the transcriptome of four population namely large Slc18a3+/- cells as well as small Slc18a3+/- cells.
INSTRUMENT(S): Illumina NovaSeq 6000
ORGANISM(S): Rattus norvegicus
SUBMITTER: Yihang Shen
PROVIDER: E-MTAB-10975 | biostudies-arrayexpress |
REPOSITORIES: biostudies-arrayexpress
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